Strain Fitness in Pseudomonas putida KT2440 around PP_3565

Experiment: Growth at pH7 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3564 and PP_3565 are separated by 104 nucleotidesPP_3565 and PP_3566 are separated by 48 nucleotides PP_3564: PP_3564 - Transcriptional regulator, AraC family, at 4,042,766 to 4,043,743 _3564 PP_3565: PP_3565 - Transporter, LysE family, at 4,043,848 to 4,044,459 _3565 PP_3566: PP_3566 - Major facilitator family transporter, at 4,044,508 to 4,045,707 _3566 Position (kb) 4043 4044 4045Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4043.207 kb on + strand, within PP_3564at 4043.208 kb on - strand, within PP_3564at 4043.208 kb on - strand, within PP_3564at 4043.225 kb on + strand, within PP_3564at 4043.226 kb on - strand, within PP_3564at 4043.274 kb on + strand, within PP_3564at 4043.274 kb on + strand, within PP_3564at 4043.275 kb on - strand, within PP_3564at 4043.519 kb on + strand, within PP_3564at 4043.520 kb on - strand, within PP_3564at 4043.637 kb on + strand, within PP_3564at 4043.780 kb on + strandat 4043.781 kb on - strandat 4043.810 kb on + strandat 4043.810 kb on + strandat 4043.810 kb on + strandat 4043.810 kb on + strandat 4043.811 kb on - strandat 4043.811 kb on - strandat 4043.811 kb on - strandat 4043.872 kb on + strandat 4043.872 kb on + strandat 4043.872 kb on + strandat 4043.873 kb on - strandat 4043.947 kb on + strand, within PP_3565at 4043.948 kb on - strand, within PP_3565at 4044.091 kb on + strand, within PP_3565at 4044.116 kb on + strand, within PP_3565at 4044.117 kb on - strand, within PP_3565at 4044.117 kb on - strand, within PP_3565at 4044.235 kb on + strand, within PP_3565at 4044.235 kb on + strand, within PP_3565at 4044.235 kb on + strand, within PP_3565at 4044.235 kb on + strand, within PP_3565at 4044.235 kb on + strand, within PP_3565at 4044.235 kb on + strand, within PP_3565at 4044.235 kb on + strand, within PP_3565at 4044.235 kb on + strand, within PP_3565at 4044.236 kb on - strand, within PP_3565at 4044.236 kb on - strand, within PP_3565at 4044.659 kb on + strand, within PP_3566at 4044.659 kb on + strand, within PP_3566at 4044.659 kb on + strand, within PP_3566at 4044.660 kb on - strand, within PP_3566at 4044.701 kb on + strand, within PP_3566at 4044.701 kb on + strand, within PP_3566at 4044.702 kb on - strand, within PP_3566at 4044.702 kb on - strand, within PP_3566at 4044.899 kb on - strand, within PP_3566at 4044.899 kb on - strand, within PP_3566at 4044.992 kb on + strand, within PP_3566at 4045.025 kb on + strand, within PP_3566at 4045.094 kb on + strand, within PP_3566at 4045.094 kb on + strand, within PP_3566at 4045.094 kb on + strand, within PP_3566at 4045.094 kb on + strand, within PP_3566at 4045.095 kb on - strand, within PP_3566at 4045.095 kb on - strand, within PP_3566at 4045.095 kb on - strand, within PP_3566at 4045.095 kb on - strand, within PP_3566at 4045.269 kb on + strand, within PP_3566at 4045.418 kb on - strand, within PP_3566at 4045.418 kb on - strand, within PP_3566

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose
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4,043,207 + PP_3564 0.45 +0.8
4,043,208 - PP_3564 0.45 +1.0
4,043,208 - PP_3564 0.45 -0.0
4,043,225 + PP_3564 0.47 -1.9
4,043,226 - PP_3564 0.47 -1.8
4,043,274 + PP_3564 0.52 -4.1
4,043,274 + PP_3564 0.52 -3.2
4,043,275 - PP_3564 0.52 +0.7
4,043,519 + PP_3564 0.77 -3.4
4,043,520 - PP_3564 0.77 -1.1
4,043,637 + PP_3564 0.89 +0.6
4,043,780 + +0.2
4,043,781 - -1.6
4,043,810 + -3.4
4,043,810 + -0.5
4,043,810 + +1.8
4,043,810 + +0.1
4,043,811 - -3.0
4,043,811 - +0.5
4,043,811 - +1.2
4,043,872 + -0.2
4,043,872 + -0.0
4,043,872 + -0.6
4,043,873 - +1.2
4,043,947 + PP_3565 0.16 +0.4
4,043,948 - PP_3565 0.16 -2.6
4,044,091 + PP_3565 0.40 +0.1
4,044,116 + PP_3565 0.44 +0.1
4,044,117 - PP_3565 0.44 +1.4
4,044,117 - PP_3565 0.44 +0.8
4,044,235 + PP_3565 0.63 -3.4
4,044,235 + PP_3565 0.63 -4.4
4,044,235 + PP_3565 0.63 -4.4
4,044,235 + PP_3565 0.63 -3.2
4,044,235 + PP_3565 0.63 +1.8
4,044,235 + PP_3565 0.63 -4.8
4,044,235 + PP_3565 0.63 +0.7
4,044,235 + PP_3565 0.63 -1.4
4,044,236 - PP_3565 0.63 +0.1
4,044,236 - PP_3565 0.63 -0.2
4,044,659 + PP_3566 0.13 +0.6
4,044,659 + PP_3566 0.13 +2.0
4,044,659 + PP_3566 0.13 +0.6
4,044,660 - PP_3566 0.13 +1.1
4,044,701 + PP_3566 0.16 +1.1
4,044,701 + PP_3566 0.16 -2.0
4,044,702 - PP_3566 0.16 -0.8
4,044,702 - PP_3566 0.16 -4.1
4,044,899 - PP_3566 0.33 +1.3
4,044,899 - PP_3566 0.33 -0.5
4,044,992 + PP_3566 0.40 +0.6
4,045,025 + PP_3566 0.43 +0.3
4,045,094 + PP_3566 0.49 +0.5
4,045,094 + PP_3566 0.49 -2.4
4,045,094 + PP_3566 0.49 -0.0
4,045,094 + PP_3566 0.49 +0.9
4,045,095 - PP_3566 0.49 +0.8
4,045,095 - PP_3566 0.49 +0.2
4,045,095 - PP_3566 0.49 +0.6
4,045,095 - PP_3566 0.49 -4.6
4,045,269 + PP_3566 0.63 +0.8
4,045,418 - PP_3566 0.76 -0.1
4,045,418 - PP_3566 0.76 -0.9

Or see this region's nucleotide sequence