Strain Fitness in Pseudomonas putida KT2440 around PP_1762

Experiment: Growth at pH7 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1761 and PP_1762 are separated by 30 nucleotidesPP_1762 and PP_1763 are separated by 118 nucleotides PP_1761: PP_1761 - diguanylate cyclase with phosphodiesterase domain, at 1,963,789 to 1,966,314 _1761 PP_1762: PP_1762 - conserved protein of unknown function, at 1,966,345 to 1,967,130 _1762 PP_1763: PP_1763 - putative oxidoreductase, at 1,967,249 to 1,967,989 _1763 Position (kb) 1966 1967 1968Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1965.356 kb on + strand, within PP_1761at 1965.356 kb on + strand, within PP_1761at 1965.421 kb on + strand, within PP_1761at 1965.421 kb on + strand, within PP_1761at 1965.421 kb on + strand, within PP_1761at 1965.421 kb on + strand, within PP_1761at 1965.422 kb on - strand, within PP_1761at 1965.422 kb on - strand, within PP_1761at 1965.422 kb on - strandat 1965.422 kb on - strand, within PP_1761at 1965.737 kb on + strand, within PP_1761at 1965.737 kb on + strand, within PP_1761at 1965.738 kb on - strand, within PP_1761at 1965.738 kb on - strand, within PP_1761at 1965.832 kb on + strand, within PP_1761at 1965.833 kb on - strand, within PP_1761at 1965.856 kb on + strand, within PP_1761at 1965.857 kb on - strand, within PP_1761at 1966.009 kb on + strand, within PP_1761at 1966.131 kb on + strandat 1966.132 kb on - strandat 1966.132 kb on - strandat 1966.190 kb on + strandat 1966.191 kb on - strandat 1966.213 kb on + strandat 1966.312 kb on + strandat 1966.313 kb on - strandat 1966.365 kb on + strandat 1966.466 kb on - strand, within PP_1762at 1966.466 kb on - strand, within PP_1762at 1966.514 kb on - strand, within PP_1762at 1966.555 kb on + strand, within PP_1762at 1966.556 kb on - strand, within PP_1762at 1966.556 kb on - strand, within PP_1762at 1966.556 kb on - strand, within PP_1762at 1966.556 kb on - strand, within PP_1762at 1966.585 kb on + strand, within PP_1762at 1966.663 kb on + strand, within PP_1762at 1966.663 kb on + strand, within PP_1762at 1966.664 kb on - strand, within PP_1762at 1966.810 kb on + strand, within PP_1762at 1966.810 kb on + strand, within PP_1762at 1966.811 kb on - strand, within PP_1762at 1966.867 kb on + strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.868 kb on - strand, within PP_1762at 1966.933 kb on + strand, within PP_1762at 1966.934 kb on - strand, within PP_1762at 1966.934 kb on - strand, within PP_1762at 1966.974 kb on + strand, within PP_1762at 1966.975 kb on - strand, within PP_1762at 1966.975 kb on - strand, within PP_1762at 1967.041 kb on + strand, within PP_1762at 1967.042 kb on - strand, within PP_1762at 1967.104 kb on - strandat 1967.250 kb on + strandat 1967.304 kb on + strandat 1967.305 kb on - strandat 1967.310 kb on + strandat 1967.310 kb on + strandat 1967.311 kb on - strandat 1967.311 kb on - strandat 1967.311 kb on - strandat 1967.493 kb on + strand, within PP_1763at 1967.493 kb on + strand, within PP_1763at 1967.494 kb on - strand, within PP_1763at 1967.506 kb on - strand, within PP_1763at 1967.506 kb on - strand, within PP_1763at 1967.506 kb on - strand, within PP_1763at 1967.506 kb on - strand, within PP_1763at 1967.708 kb on + strand, within PP_1763at 1967.708 kb on + strandat 1967.829 kb on + strand, within PP_1763at 1968.113 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose
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1,965,356 + PP_1761 0.62 +1.0
1,965,356 + PP_1761 0.62 +0.9
1,965,421 + PP_1761 0.65 +0.6
1,965,421 + PP_1761 0.65 -1.7
1,965,421 + PP_1761 0.65 -0.1
1,965,421 + PP_1761 0.65 -0.6
1,965,422 - PP_1761 0.65 +0.2
1,965,422 - PP_1761 0.65 +2.5
1,965,422 - -0.2
1,965,422 - PP_1761 0.65 +0.9
1,965,737 + PP_1761 0.77 +0.5
1,965,737 + PP_1761 0.77 -1.9
1,965,738 - PP_1761 0.77 -1.9
1,965,738 - PP_1761 0.77 -3.8
1,965,832 + PP_1761 0.81 -0.5
1,965,833 - PP_1761 0.81 +0.9
1,965,856 + PP_1761 0.82 +1.5
1,965,857 - PP_1761 0.82 -0.0
1,966,009 + PP_1761 0.88 +1.2
1,966,131 + +1.7
1,966,132 - -3.4
1,966,132 - +1.6
1,966,190 + +1.8
1,966,191 - +1.2
1,966,213 + -0.2
1,966,312 + -2.1
1,966,313 - +0.1
1,966,365 + -2.3
1,966,466 - PP_1762 0.15 +0.3
1,966,466 - PP_1762 0.15 -2.0
1,966,514 - PP_1762 0.22 -2.8
1,966,555 + PP_1762 0.27 +0.3
1,966,556 - PP_1762 0.27 -3.1
1,966,556 - PP_1762 0.27 -1.0
1,966,556 - PP_1762 0.27 -4.2
1,966,556 - PP_1762 0.27 +2.1
1,966,585 + PP_1762 0.31 +0.4
1,966,663 + PP_1762 0.40 -3.5
1,966,663 + PP_1762 0.40 -1.5
1,966,664 - PP_1762 0.41 -1.0
1,966,810 + PP_1762 0.59 -4.0
1,966,810 + PP_1762 0.59 -3.7
1,966,811 - PP_1762 0.59 +0.7
1,966,867 + PP_1762 0.66 -0.4
1,966,868 - PP_1762 0.67 +0.2
1,966,868 - PP_1762 0.67 -4.1
1,966,868 - PP_1762 0.67 -0.3
1,966,868 - PP_1762 0.67 -0.8
1,966,868 - PP_1762 0.67 -0.2
1,966,868 - PP_1762 0.67 +0.2
1,966,868 - PP_1762 0.67 -1.3
1,966,933 + PP_1762 0.75 -2.1
1,966,934 - PP_1762 0.75 +1.3
1,966,934 - PP_1762 0.75 -3.5
1,966,974 + PP_1762 0.80 +1.2
1,966,975 - PP_1762 0.80 +1.8
1,966,975 - PP_1762 0.80 -0.8
1,967,041 + PP_1762 0.89 -0.4
1,967,042 - PP_1762 0.89 -2.7
1,967,104 - -0.1
1,967,250 + -3.4
1,967,304 + -2.6
1,967,305 - +1.8
1,967,310 + -1.9
1,967,310 + -2.0
1,967,311 - -1.8
1,967,311 - +0.8
1,967,311 - +0.5
1,967,493 + PP_1763 0.33 +0.1
1,967,493 + PP_1763 0.33 +2.1
1,967,494 - PP_1763 0.33 -2.5
1,967,506 - PP_1763 0.35 -2.2
1,967,506 - PP_1763 0.35 -1.0
1,967,506 - PP_1763 0.35 -2.6
1,967,506 - PP_1763 0.35 -1.7
1,967,708 + PP_1763 0.62 +0.7
1,967,708 + -1.2
1,967,829 + PP_1763 0.78 +2.1
1,968,113 + +2.4

Or see this region's nucleotide sequence