Strain Fitness in Pseudomonas putida KT2440 around PP_1164

Experiment: Growth at pH7 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1163 and PP_1164 are separated by 108 nucleotidesPP_1164 and PP_1165 are separated by 72 nucleotidesPP_1165 and PP_1166 are separated by 24 nucleotides PP_1163: PP_1163 - Oxidoreductase, FAD-binding, at 1,337,285 to 1,339,321 _1163 PP_1164: PP_1164 - Transcriptional regulator, LysR family, at 1,339,430 to 1,340,326 _1164 PP_1165: PP_1165 - conserved protein of unknown function, at 1,340,399 to 1,341,268 _1165 PP_1166: PP_1166 - putative permease of the drug/metabolite transporter (DMT) superfamily, at 1,341,293 to 1,342,216 _1166 Position (kb) 1339 1340 1341Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1338.756 kb on + strand, within PP_1163at 1338.815 kb on + strand, within PP_1163at 1338.815 kb on + strand, within PP_1163at 1338.816 kb on - strand, within PP_1163at 1338.875 kb on + strand, within PP_1163at 1338.885 kb on - strand, within PP_1163at 1338.920 kb on + strand, within PP_1163at 1339.061 kb on + strandat 1339.061 kb on + strand, within PP_1163at 1339.062 kb on - strand, within PP_1163at 1339.178 kb on - strandat 1339.178 kb on - strandat 1339.371 kb on + strandat 1339.372 kb on - strandat 1339.372 kb on - strandat 1339.372 kb on - strandat 1339.412 kb on + strandat 1339.455 kb on + strandat 1339.455 kb on + strandat 1339.456 kb on - strandat 1339.456 kb on - strandat 1339.456 kb on - strandat 1339.824 kb on + strand, within PP_1164at 1340.154 kb on - strand, within PP_1164at 1340.255 kb on + strandat 1340.255 kb on + strandat 1340.255 kb on + strandat 1340.256 kb on - strandat 1340.324 kb on + strandat 1340.324 kb on + strandat 1340.413 kb on - strandat 1340.413 kb on - strandat 1340.547 kb on + strand, within PP_1165at 1340.547 kb on + strandat 1340.667 kb on - strand, within PP_1165at 1340.716 kb on - strand, within PP_1165at 1340.716 kb on - strand, within PP_1165at 1340.766 kb on + strand, within PP_1165at 1340.796 kb on + strand, within PP_1165at 1340.846 kb on + strand, within PP_1165at 1340.846 kb on + strandat 1340.846 kb on + strand, within PP_1165at 1340.846 kb on + strand, within PP_1165at 1340.847 kb on - strand, within PP_1165at 1340.847 kb on - strand, within PP_1165at 1340.847 kb on - strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.848 kb on + strand, within PP_1165at 1340.849 kb on - strand, within PP_1165at 1340.849 kb on - strand, within PP_1165at 1340.849 kb on - strand, within PP_1165at 1340.849 kb on - strand, within PP_1165at 1340.849 kb on - strand, within PP_1165at 1340.849 kb on - strand, within PP_1165at 1340.849 kb on - strand, within PP_1165at 1340.849 kb on - strand, within PP_1165at 1340.849 kb on - strand, within PP_1165at 1340.927 kb on + strand, within PP_1165at 1341.122 kb on - strand, within PP_1165at 1341.282 kb on + strandat 1341.283 kb on - strandat 1341.309 kb on + strandat 1341.309 kb on + strandat 1341.310 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose
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1,338,756 + PP_1163 0.72 +1.4
1,338,815 + PP_1163 0.75 -3.2
1,338,815 + PP_1163 0.75 +0.1
1,338,816 - PP_1163 0.75 -0.3
1,338,875 + PP_1163 0.78 -3.6
1,338,885 - PP_1163 0.79 -0.5
1,338,920 + PP_1163 0.80 +0.1
1,339,061 + -1.2
1,339,061 + PP_1163 0.87 -3.6
1,339,062 - PP_1163 0.87 -0.0
1,339,178 - -3.3
1,339,178 - -2.7
1,339,371 + +0.9
1,339,372 - +1.1
1,339,372 - +0.8
1,339,372 - +0.3
1,339,412 + -0.1
1,339,455 + -3.2
1,339,455 + -0.6
1,339,456 - +0.3
1,339,456 - -2.7
1,339,456 - -0.4
1,339,824 + PP_1164 0.44 -1.8
1,340,154 - PP_1164 0.81 -0.8
1,340,255 + -0.7
1,340,255 + +0.8
1,340,255 + -2.4
1,340,256 - +0.6
1,340,324 + +0.7
1,340,324 + -3.2
1,340,413 - +0.7
1,340,413 - -0.3
1,340,547 + PP_1165 0.17 +0.3
1,340,547 + +0.0
1,340,667 - PP_1165 0.31 -0.2
1,340,716 - PP_1165 0.36 -1.0
1,340,716 - PP_1165 0.36 -0.1
1,340,766 + PP_1165 0.42 -0.9
1,340,796 + PP_1165 0.46 +0.7
1,340,846 + PP_1165 0.51 -2.8
1,340,846 + +1.2
1,340,846 + PP_1165 0.51 -4.7
1,340,846 + PP_1165 0.51 +0.3
1,340,847 - PP_1165 0.51 +1.2
1,340,847 - PP_1165 0.51 +0.5
1,340,847 - PP_1165 0.51 +0.3
1,340,848 + PP_1165 0.52 +1.7
1,340,848 + PP_1165 0.52 -3.6
1,340,848 + PP_1165 0.52 -0.2
1,340,848 + PP_1165 0.52 -1.8
1,340,848 + PP_1165 0.52 +1.1
1,340,848 + PP_1165 0.52 +0.7
1,340,848 + PP_1165 0.52 -4.0
1,340,848 + PP_1165 0.52 +1.0
1,340,848 + PP_1165 0.52 +1.1
1,340,848 + PP_1165 0.52 +0.8
1,340,848 + PP_1165 0.52 +1.0
1,340,848 + PP_1165 0.52 +1.2
1,340,848 + PP_1165 0.52 -3.6
1,340,848 + PP_1165 0.52 -1.8
1,340,848 + PP_1165 0.52 +0.2
1,340,848 + PP_1165 0.52 +1.8
1,340,849 - PP_1165 0.52 -3.4
1,340,849 - PP_1165 0.52 +0.4
1,340,849 - PP_1165 0.52 +1.6
1,340,849 - PP_1165 0.52 +2.0
1,340,849 - PP_1165 0.52 +2.0
1,340,849 - PP_1165 0.52 +1.2
1,340,849 - PP_1165 0.52 -3.3
1,340,849 - PP_1165 0.52 -0.8
1,340,849 - PP_1165 0.52 +1.2
1,340,927 + PP_1165 0.61 +1.0
1,341,122 - PP_1165 0.83 -2.7
1,341,282 + +0.6
1,341,283 - -0.6
1,341,309 + -4.0
1,341,309 + +1.2
1,341,310 - -0.4

Or see this region's nucleotide sequence