Experiment: Growth at pH7 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2820 and PP_2821 are separated by 177 nucleotides PP_2821 and PP_5539 are separated by 11 nucleotides PP_5539 and PP_2823 are separated by 29 nucleotides
PP_2820: PP_2820 - HTH-type transcriptional regulator nfxB, at 3,218,700 to 3,219,257
_2820
PP_2821: PP_2821 - conserved exported protein of unknown function, at 3,219,435 to 3,219,839
_2821
PP_5539: PP_5539 - conserved exported protein of unknown function, at 3,219,851 to 3,221,011
_5539
PP_2823: PP_2823 - Methyl-accepting chemotaxis transducer, at 3,221,041 to 3,222,693
_2823
Position (kb) 3219
3220
3221
3222 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3219.092 kb on - strand, within PP_2820 at 3219.277 kb on + strand at 3219.311 kb on - strand at 3219.331 kb on + strand at 3219.488 kb on + strand, within PP_2821 at 3219.490 kb on + strand, within PP_2821 at 3219.490 kb on + strand, within PP_2821 at 3219.491 kb on - strand, within PP_2821 at 3219.596 kb on - strand, within PP_2821 at 3219.638 kb on - strand, within PP_2821 at 3219.708 kb on + strand, within PP_2821 at 3219.708 kb on + strand, within PP_2821 at 3219.708 kb on + strand, within PP_2821 at 3219.709 kb on - strand, within PP_2821 at 3219.709 kb on - strand, within PP_2821 at 3219.852 kb on + strand at 3219.852 kb on + strand at 3219.894 kb on + strand at 3219.894 kb on + strand at 3219.895 kb on - strand at 3219.895 kb on - strand at 3220.053 kb on + strand, within PP_5539 at 3220.053 kb on + strand, within PP_5539 at 3220.065 kb on + strand, within PP_5539 at 3220.110 kb on + strand, within PP_5539 at 3220.110 kb on + strand, within PP_5539 at 3220.111 kb on - strand, within PP_5539 at 3220.114 kb on + strand, within PP_5539 at 3220.115 kb on - strand, within PP_5539 at 3220.115 kb on - strand, within PP_5539 at 3220.158 kb on + strand, within PP_5539 at 3220.159 kb on - strand, within PP_5539 at 3220.159 kb on - strand, within PP_5539 at 3220.159 kb on - strand, within PP_5539 at 3220.243 kb on - strand, within PP_5539 at 3220.395 kb on + strand, within PP_5539 at 3220.446 kb on + strand, within PP_5539 at 3220.536 kb on + strand, within PP_5539 at 3220.536 kb on + strand, within PP_5539 at 3220.536 kb on + strand, within PP_5539 at 3220.557 kb on + strand, within PP_5539 at 3220.558 kb on - strand, within PP_5539 at 3220.581 kb on + strand, within PP_5539 at 3220.641 kb on + strand, within PP_5539 at 3220.641 kb on + strand, within PP_5539 at 3220.647 kb on + strand, within PP_5539 at 3220.648 kb on - strand, within PP_5539 at 3220.648 kb on - strand, within PP_5539 at 3220.648 kb on - strand, within PP_5539 at 3220.648 kb on - strand, within PP_5539 at 3220.710 kb on + strand, within PP_5539 at 3220.710 kb on + strand, within PP_5539 at 3220.710 kb on + strand, within PP_5539 at 3220.711 kb on - strand, within PP_5539 at 3221.230 kb on + strand, within PP_2823 at 3221.652 kb on + strand, within PP_2823 at 3221.736 kb on + strand, within PP_2823 at 3221.736 kb on + strand, within PP_2823 at 3221.736 kb on + strand, within PP_2823 at 3221.737 kb on - strand, within PP_2823 at 3221.737 kb on - strand, within PP_2823 at 3221.737 kb on - strand at 3221.752 kb on + strand, within PP_2823 at 3221.753 kb on - strand, within PP_2823 at 3221.753 kb on - strand, within PP_2823
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) D-Glucose remove 3,219,092 - PP_2820 0.70 -3.2 3,219,277 + -3.1 3,219,311 - +1.4 3,219,331 + -4.0 3,219,488 + PP_2821 0.13 -0.5 3,219,490 + PP_2821 0.14 -0.7 3,219,490 + PP_2821 0.14 -0.1 3,219,491 - PP_2821 0.14 -1.7 3,219,596 - PP_2821 0.40 -0.2 3,219,638 - PP_2821 0.50 +0.9 3,219,708 + PP_2821 0.67 +0.8 3,219,708 + PP_2821 0.67 -0.2 3,219,708 + PP_2821 0.67 -1.1 3,219,709 - PP_2821 0.68 -1.9 3,219,709 - PP_2821 0.68 +0.6 3,219,852 + +0.1 3,219,852 + -3.5 3,219,894 + +0.5 3,219,894 + -0.8 3,219,895 - +0.6 3,219,895 - +0.2 3,220,053 + PP_5539 0.17 -1.9 3,220,053 + PP_5539 0.17 +0.9 3,220,065 + PP_5539 0.18 -0.0 3,220,110 + PP_5539 0.22 -0.6 3,220,110 + PP_5539 0.22 -2.1 3,220,111 - PP_5539 0.22 +0.5 3,220,114 + PP_5539 0.23 -3.0 3,220,115 - PP_5539 0.23 +0.6 3,220,115 - PP_5539 0.23 +0.1 3,220,158 + PP_5539 0.26 +0.3 3,220,159 - PP_5539 0.27 -1.3 3,220,159 - PP_5539 0.27 -3.5 3,220,159 - PP_5539 0.27 +0.3 3,220,243 - PP_5539 0.34 -3.5 3,220,395 + PP_5539 0.47 +1.6 3,220,446 + PP_5539 0.51 +1.1 3,220,536 + PP_5539 0.59 +0.1 3,220,536 + PP_5539 0.59 +0.8 3,220,536 + PP_5539 0.59 -0.9 3,220,557 + PP_5539 0.61 -1.4 3,220,558 - PP_5539 0.61 +0.6 3,220,581 + PP_5539 0.63 +2.1 3,220,641 + PP_5539 0.68 -4.7 3,220,641 + PP_5539 0.68 +1.4 3,220,647 + PP_5539 0.69 +0.2 3,220,648 - PP_5539 0.69 +0.8 3,220,648 - PP_5539 0.69 -0.8 3,220,648 - PP_5539 0.69 -0.3 3,220,648 - PP_5539 0.69 -0.1 3,220,710 + PP_5539 0.74 +1.9 3,220,710 + PP_5539 0.74 -3.9 3,220,710 + PP_5539 0.74 +0.0 3,220,711 - PP_5539 0.74 +1.0 3,221,230 + PP_2823 0.11 +1.2 3,221,652 + PP_2823 0.37 -0.2 3,221,736 + PP_2823 0.42 -1.0 3,221,736 + PP_2823 0.42 +0.2 3,221,736 + PP_2823 0.42 +0.5 3,221,737 - PP_2823 0.42 +1.3 3,221,737 - PP_2823 0.42 -3.3 3,221,737 - -0.5 3,221,752 + PP_2823 0.43 -1.2 3,221,753 - PP_2823 0.43 -0.8 3,221,753 - PP_2823 0.43 +0.6
Or see this region's nucleotide sequence