Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3575 and PP_3576 are separated by 67 nucleotides PP_3576 and PP_3577 overlap by 4 nucleotides PP_3577 and PP_3578 are separated by 78 nucleotides
PP_3575: PP_3575 - Outer membrane ferric siderophore receptor, at 4,055,256 to 4,057,661
_3575
PP_3576: PP_3576 - putative Transmembrane sensor, at 4,057,729 to 4,058,673
_3576
PP_3577: PP_3577 - RNA polymerase, sigma 19 factor, at 4,058,670 to 4,059,182
_3577
PP_3578: PP_3578 - phosphoglucomutase, at 4,059,261 to 4,060,898
_3578
Position (kb) 4057
4058
4059 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4056.826 kb on + strand, within PP_3575 at 4056.826 kb on + strand, within PP_3575 at 4056.826 kb on + strand, within PP_3575 at 4056.983 kb on - strand at 4057.000 kb on + strand, within PP_3575 at 4057.000 kb on + strand, within PP_3575 at 4057.085 kb on + strand, within PP_3575 at 4057.162 kb on + strand, within PP_3575 at 4057.163 kb on - strand, within PP_3575 at 4057.249 kb on + strand, within PP_3575 at 4057.420 kb on + strand, within PP_3575 at 4057.439 kb on + strand at 4057.440 kb on - strand at 4057.455 kb on + strand at 4057.456 kb on - strand at 4057.456 kb on - strand at 4057.456 kb on - strand at 4057.547 kb on + strand at 4057.650 kb on + strand at 4057.651 kb on - strand at 4057.651 kb on - strand at 4057.904 kb on + strand, within PP_3576 at 4058.047 kb on + strand, within PP_3576 at 4058.047 kb on + strand, within PP_3576 at 4058.047 kb on + strand, within PP_3576 at 4058.048 kb on - strand, within PP_3576 at 4058.048 kb on - strand, within PP_3576 at 4058.048 kb on - strand, within PP_3576 at 4058.702 kb on - strand at 4058.716 kb on + strand at 4058.717 kb on - strand at 4058.717 kb on - strand at 4058.717 kb on - strand at 4058.717 kb on - strand at 4058.926 kb on + strand, within PP_3577 at 4058.926 kb on + strand, within PP_3577 at 4058.926 kb on + strand, within PP_3577 at 4058.926 kb on + strand, within PP_3577 at 4058.927 kb on - strand, within PP_3577 at 4058.942 kb on + strand, within PP_3577 at 4058.942 kb on + strand, within PP_3577 at 4058.943 kb on - strand, within PP_3577 at 4058.992 kb on + strand, within PP_3577 at 4059.009 kb on + strand, within PP_3577 at 4059.054 kb on - strand, within PP_3577 at 4059.092 kb on + strand, within PP_3577 at 4059.093 kb on - strand, within PP_3577 at 4059.093 kb on - strand, within PP_3577 at 4059.137 kb on - strand at 4059.352 kb on + strand at 4059.352 kb on + strand at 4059.353 kb on - strand at 4059.353 kb on - strand at 4059.410 kb on + strand at 4059.410 kb on + strand at 4059.410 kb on + strand at 4059.411 kb on - strand at 4059.598 kb on + strand, within PP_3578 at 4059.599 kb on - strand, within PP_3578 at 4059.599 kb on - strand, within PP_3578
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 4,056,826 + PP_3575 0.65 +0.1 4,056,826 + PP_3575 0.65 -0.5 4,056,826 + PP_3575 0.65 +0.4 4,056,983 - +2.2 4,057,000 + PP_3575 0.72 -0.6 4,057,000 + PP_3575 0.72 -0.4 4,057,085 + PP_3575 0.76 -0.5 4,057,162 + PP_3575 0.79 -0.6 4,057,163 - PP_3575 0.79 -0.4 4,057,249 + PP_3575 0.83 -4.1 4,057,420 + PP_3575 0.90 -4.0 4,057,439 + +0.4 4,057,440 - +1.6 4,057,455 + -0.6 4,057,456 - +0.2 4,057,456 - -1.2 4,057,456 - +0.5 4,057,547 + -3.5 4,057,650 + +0.8 4,057,651 - -0.3 4,057,651 - -1.3 4,057,904 + PP_3576 0.19 +0.8 4,058,047 + PP_3576 0.34 +0.6 4,058,047 + PP_3576 0.34 -4.8 4,058,047 + PP_3576 0.34 -1.5 4,058,048 - PP_3576 0.34 -3.1 4,058,048 - PP_3576 0.34 -2.6 4,058,048 - PP_3576 0.34 -1.4 4,058,702 - +0.8 4,058,716 + -2.6 4,058,717 - +0.9 4,058,717 - +0.7 4,058,717 - -0.9 4,058,717 - +0.8 4,058,926 + PP_3577 0.50 +1.3 4,058,926 + PP_3577 0.50 +1.4 4,058,926 + PP_3577 0.50 -0.1 4,058,926 + PP_3577 0.50 -3.9 4,058,927 - PP_3577 0.50 +0.5 4,058,942 + PP_3577 0.53 -3.0 4,058,942 + PP_3577 0.53 +0.1 4,058,943 - PP_3577 0.53 -4.3 4,058,992 + PP_3577 0.63 -0.6 4,059,009 + PP_3577 0.66 -4.2 4,059,054 - PP_3577 0.75 -1.6 4,059,092 + PP_3577 0.82 +1.6 4,059,093 - PP_3577 0.82 +1.4 4,059,093 - PP_3577 0.82 -1.4 4,059,137 - +1.1 4,059,352 + +1.3 4,059,352 + -1.5 4,059,353 - +0.6 4,059,353 - -0.2 4,059,410 + +0.2 4,059,410 + -0.7 4,059,410 + +1.0 4,059,411 - -0.1 4,059,598 + PP_3578 0.21 -1.9 4,059,599 - PP_3578 0.21 -1.7 4,059,599 - PP_3578 0.21 +1.5
Or see this region's nucleotide sequence