Strain Fitness in Pseudomonas putida KT2440 around PP_1161

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1159 and PP_1160 overlap by 4 nucleotidesPP_1160 and PP_1161 overlap by 29 nucleotidesPP_1161 and PP_1162 are separated by 169 nucleotidesPP_1162 and PP_1163 are separated by 27 nucleotides PP_1159: PP_1159 - conserved membrane protein of unknown function, at 1,333,675 to 1,334,829 _1159 PP_1160: PP_1160 - Asparaginase family protein, at 1,334,826 to 1,335,815 _1160 PP_1161: PP_1161 - putative Lipoprotein, at 1,335,787 to 1,336,458 _1161 PP_1162: PP_1162 - Protein GstA, at 1,336,628 to 1,337,257 _1162 PP_1163: PP_1163 - Oxidoreductase, FAD-binding, at 1,337,285 to 1,339,321 _1163 Position (kb) 1335 1336 1337Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1334.799 kb on - strandat 1335.091 kb on + strand, within PP_1160at 1335.091 kb on + strand, within PP_1160at 1335.092 kb on - strand, within PP_1160at 1335.092 kb on - strand, within PP_1160at 1335.129 kb on + strand, within PP_1160at 1335.130 kb on - strand, within PP_1160at 1335.405 kb on + strand, within PP_1160at 1335.406 kb on - strand, within PP_1160at 1335.532 kb on - strand, within PP_1160at 1335.632 kb on + strand, within PP_1160at 1335.632 kb on + strand, within PP_1160at 1335.633 kb on - strand, within PP_1160at 1335.653 kb on + strand, within PP_1160at 1335.653 kb on + strand, within PP_1160at 1335.654 kb on - strand, within PP_1160at 1335.670 kb on - strand, within PP_1160at 1335.714 kb on + strand, within PP_1160at 1335.715 kb on - strand, within PP_1160at 1335.770 kb on - strandat 1335.869 kb on + strand, within PP_1161at 1335.918 kb on - strand, within PP_1161at 1335.948 kb on - strand, within PP_1161at 1335.965 kb on - strand, within PP_1161at 1335.976 kb on + strand, within PP_1161at 1335.976 kb on + strand, within PP_1161at 1336.120 kb on + strand, within PP_1161at 1336.121 kb on - strand, within PP_1161at 1336.121 kb on - strand, within PP_1161at 1336.142 kb on - strand, within PP_1161at 1336.142 kb on - strand, within PP_1161at 1336.259 kb on - strand, within PP_1161at 1336.334 kb on + strand, within PP_1161at 1336.334 kb on + strand, within PP_1161at 1336.350 kb on + strand, within PP_1161at 1336.432 kb on + strandat 1336.649 kb on + strandat 1336.650 kb on - strandat 1336.650 kb on - strandat 1336.650 kb on - strandat 1336.701 kb on + strand, within PP_1162at 1336.850 kb on + strand, within PP_1162at 1336.851 kb on - strand, within PP_1162at 1336.851 kb on - strand, within PP_1162at 1336.866 kb on - strand, within PP_1162at 1336.877 kb on - strand, within PP_1162at 1337.003 kb on - strand, within PP_1162at 1337.065 kb on + strand, within PP_1162at 1337.066 kb on - strand, within PP_1162at 1337.066 kb on - strand, within PP_1162at 1337.066 kb on - strand, within PP_1162at 1337.097 kb on + strand, within PP_1162at 1337.114 kb on + strand, within PP_1162at 1337.115 kb on - strand, within PP_1162at 1337.115 kb on - strand, within PP_1162at 1337.115 kb on - strand, within PP_1162at 1337.115 kb on - strand, within PP_1162at 1337.120 kb on + strand, within PP_1162at 1337.120 kb on + strand, within PP_1162at 1337.120 kb on + strand, within PP_1162at 1337.121 kb on - strand, within PP_1162at 1337.162 kb on + strand, within PP_1162at 1337.359 kb on - strandat 1337.359 kb on - strandat 1337.429 kb on + strandat 1337.430 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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1,334,799 - -0.7
1,335,091 + PP_1160 0.27 +0.4
1,335,091 + PP_1160 0.27 -3.2
1,335,092 - PP_1160 0.27 -1.8
1,335,092 - PP_1160 0.27 +2.3
1,335,129 + PP_1160 0.31 -0.5
1,335,130 - PP_1160 0.31 -2.2
1,335,405 + PP_1160 0.58 +0.9
1,335,406 - PP_1160 0.59 +1.7
1,335,532 - PP_1160 0.71 -4.0
1,335,632 + PP_1160 0.81 -4.1
1,335,632 + PP_1160 0.81 +1.3
1,335,633 - PP_1160 0.82 -0.7
1,335,653 + PP_1160 0.84 +1.4
1,335,653 + PP_1160 0.84 +0.3
1,335,654 - PP_1160 0.84 +0.8
1,335,670 - PP_1160 0.85 +1.6
1,335,714 + PP_1160 0.90 -0.7
1,335,715 - PP_1160 0.90 -0.4
1,335,770 - -0.1
1,335,869 + PP_1161 0.12 +0.8
1,335,918 - PP_1161 0.19 -2.6
1,335,948 - PP_1161 0.24 -0.4
1,335,965 - PP_1161 0.26 -3.3
1,335,976 + PP_1161 0.28 -0.1
1,335,976 + PP_1161 0.28 -0.7
1,336,120 + PP_1161 0.50 -1.4
1,336,121 - PP_1161 0.50 -0.6
1,336,121 - PP_1161 0.50 -0.5
1,336,142 - PP_1161 0.53 -0.9
1,336,142 - PP_1161 0.53 -1.8
1,336,259 - PP_1161 0.70 -0.1
1,336,334 + PP_1161 0.81 -2.3
1,336,334 + PP_1161 0.81 -3.5
1,336,350 + PP_1161 0.84 +1.5
1,336,432 + -0.6
1,336,649 + -2.3
1,336,650 - -0.1
1,336,650 - +1.2
1,336,650 - +2.1
1,336,701 + PP_1162 0.12 -0.8
1,336,850 + PP_1162 0.35 +0.3
1,336,851 - PP_1162 0.35 -3.5
1,336,851 - PP_1162 0.35 +0.7
1,336,866 - PP_1162 0.38 +1.4
1,336,877 - PP_1162 0.40 +0.4
1,337,003 - PP_1162 0.60 -1.0
1,337,065 + PP_1162 0.69 -0.5
1,337,066 - PP_1162 0.70 +0.1
1,337,066 - PP_1162 0.70 +0.4
1,337,066 - PP_1162 0.70 +1.9
1,337,097 + PP_1162 0.74 -2.6
1,337,114 + PP_1162 0.77 -4.1
1,337,115 - PP_1162 0.77 +0.2
1,337,115 - PP_1162 0.77 +0.3
1,337,115 - PP_1162 0.77 -4.4
1,337,115 - PP_1162 0.77 +0.2
1,337,120 + PP_1162 0.78 -0.6
1,337,120 + PP_1162 0.78 +0.5
1,337,120 + PP_1162 0.78 +1.7
1,337,121 - PP_1162 0.78 +0.1
1,337,162 + PP_1162 0.85 -4.0
1,337,359 - -1.0
1,337,359 - +1.5
1,337,429 + -0.3
1,337,430 - -1.4

Or see this region's nucleotide sequence