Strain Fitness in Pseudomonas putida KT2440 around PP_0303

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0302 and PP_0303 are separated by 166 nucleotidesPP_0303 and PP_0304 are separated by 123 nucleotides PP_0302: PP_0302 - L-carnitine 3-dehydrogenase (EC 1.1.1.108) (from data), at 362,517 to 363,482 _0302 PP_0303: PP_0303 - dehydrocarnitine cleavage enzyme, at 363,649 to 364,533 _0303 PP_0304: PP_0304 - Carnitine uptake ABC transporter, periplasmic component, at 364,657 to 365,601 _0304 Position (kb) 363 364 365Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 362.695 kb on + strand, within PP_0302at 362.695 kb on + strand, within PP_0302at 362.696 kb on - strand, within PP_0302at 362.696 kb on - strand, within PP_0302at 362.771 kb on + strand, within PP_0302at 362.771 kb on + strand, within PP_0302at 362.773 kb on + strand, within PP_0302at 362.773 kb on + strand, within PP_0302at 362.773 kb on + strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.774 kb on - strand, within PP_0302at 362.777 kb on + strand, within PP_0302at 362.777 kb on + strand, within PP_0302at 362.777 kb on + strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.778 kb on - strand, within PP_0302at 362.969 kb on - strand, within PP_0302at 362.969 kb on - strand, within PP_0302at 362.991 kb on - strand, within PP_0302at 362.991 kb on - strand, within PP_0302at 363.044 kb on - strand, within PP_0302at 363.044 kb on - strand, within PP_0302at 363.100 kb on + strand, within PP_0302at 363.100 kb on + strand, within PP_0302at 363.101 kb on - strand, within PP_0302at 363.101 kb on - strand, within PP_0302at 363.482 kb on + strandat 363.482 kb on + strandat 363.482 kb on + strandat 363.483 kb on - strandat 363.483 kb on - strandat 363.483 kb on - strandat 363.499 kb on - strandat 363.508 kb on + strandat 363.508 kb on + strandat 363.508 kb on + strandat 363.508 kb on + strandat 363.508 kb on + strandat 363.509 kb on - strandat 363.509 kb on - strandat 363.509 kb on - strandat 363.780 kb on - strand, within PP_0303at 363.780 kb on - strand, within PP_0303at 363.780 kb on - strand, within PP_0303at 364.109 kb on + strand, within PP_0303at 364.109 kb on + strand, within PP_0303at 364.110 kb on - strand, within PP_0303at 364.110 kb on - strand, within PP_0303at 364.426 kb on + strand, within PP_0303at 364.668 kb on + strandat 364.881 kb on - strand, within PP_0304at 364.881 kb on - strand, within PP_0304at 365.159 kb on + strand, within PP_0304at 365.160 kb on - strand, within PP_0304at 365.160 kb on - strand, within PP_0304at 365.225 kb on + strand, within PP_0304at 365.226 kb on - strand, within PP_0304at 365.231 kb on + strand, within PP_0304at 365.317 kb on - strand, within PP_0304at 365.317 kb on - strand, within PP_0304at 365.447 kb on - strand, within PP_0304at 365.447 kb on - strand, within PP_0304

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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362,695 + PP_0302 0.18 +1.3
362,695 + PP_0302 0.18 +0.7
362,696 - PP_0302 0.19 -0.1
362,696 - PP_0302 0.19 +1.4
362,771 + PP_0302 0.26 -1.8
362,771 + PP_0302 0.26 +0.3
362,773 + PP_0302 0.27 -0.1
362,773 + PP_0302 0.27 +0.2
362,773 + PP_0302 0.27 +0.7
362,774 - PP_0302 0.27 +1.1
362,774 - PP_0302 0.27 +1.6
362,774 - PP_0302 0.27 -0.3
362,774 - PP_0302 0.27 +1.7
362,774 - PP_0302 0.27 +1.3
362,774 - PP_0302 0.27 +0.4
362,777 + PP_0302 0.27 -0.1
362,777 + PP_0302 0.27 -2.5
362,777 + PP_0302 0.27 -2.3
362,778 - PP_0302 0.27 +0.3
362,778 - PP_0302 0.27 -0.1
362,778 - PP_0302 0.27 +0.3
362,778 - PP_0302 0.27 +0.6
362,778 - PP_0302 0.27 +1.3
362,969 - PP_0302 0.47 -0.4
362,969 - PP_0302 0.47 +0.8
362,991 - PP_0302 0.49 -1.5
362,991 - PP_0302 0.49 +0.8
363,044 - PP_0302 0.55 -3.8
363,044 - PP_0302 0.55 -2.3
363,100 + PP_0302 0.60 -0.5
363,100 + PP_0302 0.60 +0.9
363,101 - PP_0302 0.60 +2.1
363,101 - PP_0302 0.60 +2.2
363,482 + -3.6
363,482 + -1.0
363,482 + +0.7
363,483 - -0.3
363,483 - -2.5
363,483 - -0.2
363,499 - +1.5
363,508 + -3.5
363,508 + -1.0
363,508 + +0.5
363,508 + -4.5
363,508 + +0.3
363,509 - +1.4
363,509 - +1.9
363,509 - -3.5
363,780 - PP_0303 0.15 -0.9
363,780 - PP_0303 0.15 +1.0
363,780 - PP_0303 0.15 -0.4
364,109 + PP_0303 0.52 -3.3
364,109 + PP_0303 0.52 -1.7
364,110 - PP_0303 0.52 -2.6
364,110 - PP_0303 0.52 -0.7
364,426 + PP_0303 0.88 -3.3
364,668 + -0.6
364,881 - PP_0304 0.24 +0.6
364,881 - PP_0304 0.24 -3.3
365,159 + PP_0304 0.53 -1.8
365,160 - PP_0304 0.53 -2.3
365,160 - PP_0304 0.53 +1.2
365,225 + PP_0304 0.60 +0.7
365,226 - PP_0304 0.60 -4.0
365,231 + PP_0304 0.61 -0.2
365,317 - PP_0304 0.70 +0.5
365,317 - PP_0304 0.70 -1.5
365,447 - PP_0304 0.84 -0.0
365,447 - PP_0304 0.84 -0.9

Or see this region's nucleotide sequence