Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4719 and PP_4720 are separated by 102 nucleotides PP_4720 and PP_4721 are separated by 12 nucleotides PP_4721 and PP_4722 overlap by 44 nucleotides PP_4722 and PP_4723 overlap by 4 nucleotides
PP_4719: PP_4719 - Ribosomal RNA large subunit methyltransferase E, at 5,366,753 to 5,367,376
_4719
PP_4720: PP_4720 - putative RNA binding protein, at 5,367,479 to 5,367,787
_4720
PP_4721: PP_4721 - conserved membrane protein of unknown function, at 5,367,800 to 5,368,270
_4721
PP_4722: PP_4722 - Transcription elongation factor GreA, at 5,368,227 to 5,368,709
_4722
PP_4723: PP_4723 - Carbamoyl-phosphate synthase large chain, at 5,368,706 to 5,371,936
_4723
Position (kb) 5367
5368
5369 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5367.392 kb on + strand at 5367.392 kb on + strand at 5367.393 kb on - strand at 5367.393 kb on - strand at 5367.479 kb on - strand at 5367.510 kb on - strand, within PP_4720 at 5367.510 kb on - strand, within PP_4720 at 5367.510 kb on - strand, within PP_4720 at 5367.779 kb on + strand at 5367.779 kb on + strand at 5367.780 kb on - strand at 5367.780 kb on - strand at 5367.780 kb on - strand at 5367.791 kb on + strand at 5367.791 kb on + strand at 5367.791 kb on + strand at 5367.792 kb on - strand at 5367.792 kb on - strand at 5367.792 kb on - strand at 5367.927 kb on + strand, within PP_4721 at 5367.927 kb on + strand, within PP_4721 at 5367.927 kb on + strand, within PP_4721 at 5367.927 kb on + strand, within PP_4721 at 5367.927 kb on + strand, within PP_4721 at 5367.927 kb on + strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.928 kb on - strand, within PP_4721 at 5367.931 kb on - strand, within PP_4721 at 5368.272 kb on - strand at 5368.292 kb on + strand, within PP_4722 at 5368.292 kb on + strand, within PP_4722 at 5368.292 kb on + strand, within PP_4722 at 5368.293 kb on - strand, within PP_4722 at 5368.293 kb on - strand, within PP_4722 at 5368.293 kb on - strand, within PP_4722 at 5368.293 kb on - strand, within PP_4722 at 5368.390 kb on + strand, within PP_4722 at 5368.390 kb on + strand, within PP_4722 at 5368.391 kb on - strand, within PP_4722 at 5368.391 kb on - strand, within PP_4722 at 5368.391 kb on - strand, within PP_4722 at 5368.426 kb on - strand, within PP_4722 at 5368.561 kb on + strand, within PP_4722 at 5368.561 kb on + strand, within PP_4722 at 5368.700 kb on + strand at 5368.851 kb on + strand at 5369.194 kb on - strand, within PP_4723 at 5369.268 kb on + strand, within PP_4723 at 5369.269 kb on - strand, within PP_4723 at 5369.269 kb on - strand, within PP_4723 at 5369.269 kb on - strand, within PP_4723
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 5,367,392 + +2.6 5,367,392 + -0.3 5,367,393 - -1.6 5,367,393 - -0.1 5,367,479 - +1.0 5,367,510 - PP_4720 0.10 +2.2 5,367,510 - PP_4720 0.10 -2.9 5,367,510 - PP_4720 0.10 +0.6 5,367,779 + -0.3 5,367,779 + -3.2 5,367,780 - -3.6 5,367,780 - +0.4 5,367,780 - +1.0 5,367,791 + -1.8 5,367,791 + -3.4 5,367,791 + -0.7 5,367,792 - -4.3 5,367,792 - +0.6 5,367,792 - -0.1 5,367,927 + PP_4721 0.27 -3.1 5,367,927 + PP_4721 0.27 +1.2 5,367,927 + PP_4721 0.27 -3.6 5,367,927 + PP_4721 0.27 -3.1 5,367,927 + PP_4721 0.27 +0.9 5,367,927 + PP_4721 0.27 +2.2 5,367,928 - PP_4721 0.27 -3.5 5,367,928 - PP_4721 0.27 -4.1 5,367,928 - PP_4721 0.27 -2.5 5,367,928 - PP_4721 0.27 -1.7 5,367,928 - PP_4721 0.27 -2.0 5,367,928 - PP_4721 0.27 +0.7 5,367,928 - PP_4721 0.27 -3.4 5,367,928 - PP_4721 0.27 -3.7 5,367,931 - PP_4721 0.28 -2.8 5,368,272 - +2.4 5,368,292 + PP_4722 0.13 +0.8 5,368,292 + PP_4722 0.13 -3.0 5,368,292 + PP_4722 0.13 -2.7 5,368,293 - PP_4722 0.14 -1.8 5,368,293 - PP_4722 0.14 -0.6 5,368,293 - PP_4722 0.14 -3.3 5,368,293 - PP_4722 0.14 -1.0 5,368,390 + PP_4722 0.34 -1.5 5,368,390 + PP_4722 0.34 +1.6 5,368,391 - PP_4722 0.34 -1.2 5,368,391 - PP_4722 0.34 -1.8 5,368,391 - PP_4722 0.34 -2.7 5,368,426 - PP_4722 0.41 +1.2 5,368,561 + PP_4722 0.69 +1.1 5,368,561 + PP_4722 0.69 -1.0 5,368,700 + +1.5 5,368,851 + +2.0 5,369,194 - PP_4723 0.15 +0.4 5,369,268 + PP_4723 0.17 +2.0 5,369,269 - PP_4723 0.17 +0.4 5,369,269 - PP_4723 0.17 +2.0 5,369,269 - PP_4723 0.17 +1.0
Or see this region's nucleotide sequence