Strain Fitness in Pseudomonas putida KT2440 around PP_4245

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4243 and PP_4244 are separated by 305 nucleotidesPP_4244 and PP_4245 are separated by 151 nucleotidesPP_4245 and PP_4246 are separated by 63 nucleotides PP_4243: PP_4243 - non-ribosomal peptide synthase (subunit of ferribactin synthase), at 4,818,236 to 4,831,189 _4243 PP_4244: PP_4244 - alternative sigma factor, at 4,831,495 to 4,832,025 _4244 PP_4245: PP_4245 - hydroxyproline acetylase, at 4,832,177 to 4,833,190 _4245 PP_4246: PP_4246 - Periplasmic binding protein, at 4,833,254 to 4,834,054 _4246 Position (kb) 4832 4833 4834Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4831.214 kb on + strandat 4831.214 kb on + strandat 4831.236 kb on - strandat 4831.253 kb on + strandat 4831.253 kb on + strandat 4831.254 kb on - strandat 4831.254 kb on - strandat 4831.269 kb on + strandat 4831.269 kb on + strandat 4831.269 kb on + strandat 4831.269 kb on + strandat 4831.270 kb on - strandat 4831.270 kb on - strandat 4831.270 kb on - strandat 4831.270 kb on - strandat 4831.270 kb on - strandat 4831.322 kb on - strandat 4831.322 kb on - strandat 4831.322 kb on - strandat 4831.331 kb on + strandat 4831.338 kb on + strandat 4831.362 kb on - strandat 4831.422 kb on + strandat 4831.422 kb on + strandat 4831.439 kb on + strandat 4831.439 kb on + strandat 4831.440 kb on - strandat 4831.508 kb on + strandat 4831.509 kb on - strandat 4831.509 kb on - strandat 4831.518 kb on + strandat 4831.518 kb on + strandat 4831.518 kb on + strandat 4831.536 kb on - strandat 4831.536 kb on - strandat 4831.536 kb on - strandat 4831.622 kb on + strand, within PP_4244at 4831.622 kb on + strand, within PP_4244at 4831.623 kb on - strand, within PP_4244at 4831.623 kb on - strand, within PP_4244at 4831.691 kb on - strand, within PP_4244at 4831.691 kb on - strand, within PP_4244at 4831.730 kb on + strand, within PP_4244at 4831.730 kb on - strand, within PP_4244at 4831.756 kb on + strand, within PP_4244at 4831.757 kb on - strand, within PP_4244at 4831.757 kb on - strand, within PP_4244at 4831.886 kb on - strand, within PP_4244at 4831.886 kb on - strand, within PP_4244at 4831.900 kb on + strand, within PP_4244at 4831.901 kb on - strand, within PP_4244at 4831.908 kb on + strand, within PP_4244at 4831.909 kb on - strand, within PP_4244at 4831.909 kb on - strand, within PP_4244at 4831.909 kb on - strand, within PP_4244at 4832.087 kb on - strandat 4832.087 kb on - strandat 4832.087 kb on - strandat 4832.087 kb on - strandat 4832.089 kb on + strandat 4832.090 kb on - strandat 4832.105 kb on + strandat 4832.143 kb on + strandat 4832.144 kb on - strandat 4832.152 kb on + strandat 4832.153 kb on - strandat 4832.153 kb on - strandat 4832.171 kb on + strandat 4832.172 kb on - strandat 4832.172 kb on - strandat 4832.289 kb on + strand, within PP_4245at 4832.290 kb on - strand, within PP_4245at 4832.364 kb on + strand, within PP_4245at 4832.365 kb on - strand, within PP_4245at 4832.365 kb on - strand, within PP_4245at 4832.434 kb on + strand, within PP_4245at 4832.434 kb on + strand, within PP_4245at 4832.435 kb on - strand, within PP_4245at 4832.435 kb on - strand, within PP_4245at 4832.440 kb on + strand, within PP_4245at 4832.451 kb on + strand, within PP_4245at 4832.467 kb on - strand, within PP_4245at 4832.499 kb on + strand, within PP_4245at 4832.554 kb on + strand, within PP_4245at 4832.554 kb on + strand, within PP_4245at 4832.555 kb on - strand, within PP_4245at 4832.555 kb on - strand, within PP_4245at 4832.584 kb on - strand, within PP_4245at 4832.805 kb on + strand, within PP_4245at 4832.805 kb on + strand, within PP_4245at 4832.807 kb on + strand, within PP_4245at 4832.807 kb on + strand, within PP_4245at 4832.807 kb on + strand, within PP_4245at 4832.874 kb on + strand, within PP_4245at 4832.874 kb on + strand, within PP_4245at 4832.875 kb on - strand, within PP_4245at 4832.988 kb on + strand, within PP_4245at 4832.989 kb on - strand, within PP_4245at 4833.256 kb on - strandat 4833.396 kb on + strand, within PP_4246at 4833.396 kb on + strand, within PP_4246at 4833.397 kb on - strand, within PP_4246at 4833.397 kb on - strand, within PP_4246at 4833.471 kb on + strand, within PP_4246at 4833.472 kb on - strand, within PP_4246at 4833.493 kb on + strand, within PP_4246at 4833.541 kb on - strand, within PP_4246at 4833.558 kb on + strand, within PP_4246at 4833.558 kb on + strand, within PP_4246at 4833.558 kb on + strand, within PP_4246at 4833.559 kb on - strand, within PP_4246at 4833.559 kb on - strand, within PP_4246at 4833.559 kb on - strandat 4833.559 kb on - strand, within PP_4246at 4833.559 kb on - strand, within PP_4246at 4833.559 kb on - strand, within PP_4246at 4833.559 kb on - strand, within PP_4246at 4833.559 kb on - strand, within PP_4246at 4833.573 kb on + strand, within PP_4246at 4833.613 kb on - strand, within PP_4246at 4833.821 kb on - strand, within PP_4246at 4833.826 kb on + strand, within PP_4246at 4833.826 kb on + strand, within PP_4246at 4833.826 kb on + strand, within PP_4246at 4833.827 kb on - strand, within PP_4246at 4833.846 kb on + strand, within PP_4246at 4833.847 kb on - strand, within PP_4246at 4833.847 kb on - strand, within PP_4246at 4833.847 kb on - strand, within PP_4246at 4833.927 kb on + strand, within PP_4246at 4833.927 kb on + strand, within PP_4246at 4834.075 kb on + strandat 4834.075 kb on + strandat 4834.084 kb on - strandat 4834.091 kb on + strandat 4834.092 kb on - strandat 4834.092 kb on - strandat 4834.097 kb on - strandat 4834.123 kb on - strandat 4834.123 kb on - strandat 4834.166 kb on + strandat 4834.166 kb on + strandat 4834.166 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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4,831,214 + -0.3
4,831,214 + +1.2
4,831,236 - -1.3
4,831,253 + +1.1
4,831,253 + +0.7
4,831,254 - -0.0
4,831,254 - +2.6
4,831,269 + -1.5
4,831,269 + -0.8
4,831,269 + +0.4
4,831,269 + +1.3
4,831,270 - -0.3
4,831,270 - -3.0
4,831,270 - +1.3
4,831,270 - -2.2
4,831,270 - +0.6
4,831,322 - +1.2
4,831,322 - +0.9
4,831,322 - +0.2
4,831,331 + +1.1
4,831,338 + +0.5
4,831,362 - -2.0
4,831,422 + +0.4
4,831,422 + +0.0
4,831,439 + -1.2
4,831,439 + -2.9
4,831,440 - -0.4
4,831,508 + +1.1
4,831,509 - +2.0
4,831,509 - +0.4
4,831,518 + -0.3
4,831,518 + -4.7
4,831,518 + +0.2
4,831,536 - +0.2
4,831,536 - +1.3
4,831,536 - -2.0
4,831,622 + PP_4244 0.24 +0.1
4,831,622 + PP_4244 0.24 -0.8
4,831,623 - PP_4244 0.24 +0.7
4,831,623 - PP_4244 0.24 -4.6
4,831,691 - PP_4244 0.37 +0.5
4,831,691 - PP_4244 0.37 +0.4
4,831,730 + PP_4244 0.44 -0.3
4,831,730 - PP_4244 0.44 -0.0
4,831,756 + PP_4244 0.49 +0.3
4,831,757 - PP_4244 0.49 -3.1
4,831,757 - PP_4244 0.49 +1.2
4,831,886 - PP_4244 0.74 -1.6
4,831,886 - PP_4244 0.74 +0.1
4,831,900 + PP_4244 0.76 -2.6
4,831,901 - PP_4244 0.76 -2.3
4,831,908 + PP_4244 0.78 -2.6
4,831,909 - PP_4244 0.78 -4.5
4,831,909 - PP_4244 0.78 -0.5
4,831,909 - PP_4244 0.78 -3.3
4,832,087 - +1.0
4,832,087 - -0.7
4,832,087 - +0.0
4,832,087 - +0.3
4,832,089 + +1.2
4,832,090 - -0.1
4,832,105 + +0.0
4,832,143 + +0.3
4,832,144 - +0.3
4,832,152 + -0.2
4,832,153 - -1.2
4,832,153 - -1.3
4,832,171 + +1.2
4,832,172 - +1.0
4,832,172 - +0.7
4,832,289 + PP_4245 0.11 -0.9
4,832,290 - PP_4245 0.11 -2.7
4,832,364 + PP_4245 0.18 +0.5
4,832,365 - PP_4245 0.19 -3.9
4,832,365 - PP_4245 0.19 +0.1
4,832,434 + PP_4245 0.25 +0.7
4,832,434 + PP_4245 0.25 -0.1
4,832,435 - PP_4245 0.25 -3.2
4,832,435 - PP_4245 0.25 -1.8
4,832,440 + PP_4245 0.26 -0.3
4,832,451 + PP_4245 0.27 +1.1
4,832,467 - PP_4245 0.29 +0.5
4,832,499 + PP_4245 0.32 -3.6
4,832,554 + PP_4245 0.37 -2.0
4,832,554 + PP_4245 0.37 +0.1
4,832,555 - PP_4245 0.37 -0.8
4,832,555 - PP_4245 0.37 -3.1
4,832,584 - PP_4245 0.40 -3.5
4,832,805 + PP_4245 0.62 -0.6
4,832,805 + PP_4245 0.62 -0.5
4,832,807 + PP_4245 0.62 -4.0
4,832,807 + PP_4245 0.62 +0.9
4,832,807 + PP_4245 0.62 +1.0
4,832,874 + PP_4245 0.69 -3.5
4,832,874 + PP_4245 0.69 +0.7
4,832,875 - PP_4245 0.69 -2.5
4,832,988 + PP_4245 0.80 +0.8
4,832,989 - PP_4245 0.80 -1.2
4,833,256 - -4.0
4,833,396 + PP_4246 0.18 -1.8
4,833,396 + PP_4246 0.18 -0.5
4,833,397 - PP_4246 0.18 +1.2
4,833,397 - PP_4246 0.18 +1.2
4,833,471 + PP_4246 0.27 -0.5
4,833,472 - PP_4246 0.27 -3.5
4,833,493 + PP_4246 0.30 -0.5
4,833,541 - PP_4246 0.36 -3.8
4,833,558 + PP_4246 0.38 -3.1
4,833,558 + PP_4246 0.38 +0.7
4,833,558 + PP_4246 0.38 +0.3
4,833,559 - PP_4246 0.38 +0.1
4,833,559 - PP_4246 0.38 -0.6
4,833,559 - -0.3
4,833,559 - PP_4246 0.38 +0.3
4,833,559 - PP_4246 0.38 +0.0
4,833,559 - PP_4246 0.38 -3.1
4,833,559 - PP_4246 0.38 +0.6
4,833,559 - PP_4246 0.38 +0.9
4,833,573 + PP_4246 0.40 +1.3
4,833,613 - PP_4246 0.45 -0.3
4,833,821 - PP_4246 0.71 +0.8
4,833,826 + PP_4246 0.71 -1.4
4,833,826 + PP_4246 0.71 +0.1
4,833,826 + PP_4246 0.71 +0.8
4,833,827 - PP_4246 0.72 +0.4
4,833,846 + PP_4246 0.74 -0.1
4,833,847 - PP_4246 0.74 -0.6
4,833,847 - PP_4246 0.74 +0.4
4,833,847 - PP_4246 0.74 -0.3
4,833,927 + PP_4246 0.84 -4.3
4,833,927 + PP_4246 0.84 -4.6
4,834,075 + -0.7
4,834,075 + -0.8
4,834,084 - -1.7
4,834,091 + -0.0
4,834,092 - -2.6
4,834,092 - -1.2
4,834,097 - -4.0
4,834,123 - -1.2
4,834,123 - -0.0
4,834,166 + +1.1
4,834,166 + +0.5
4,834,166 + +0.7

Or see this region's nucleotide sequence