Strain Fitness in Pseudomonas putida KT2440 around PP_4046

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4043 and PP_4044 are separated by 166 nucleotidesPP_4044 and PP_4045 are separated by 42 nucleotidesPP_4045 and PP_4046 are separated by 45 nucleotidesPP_4046 and PP_4047 are separated by 15 nucleotidesPP_4047 and PP_4048 are separated by 9 nucleotides PP_4043: PP_4043 - putative 6-phosphogluconate dehydrogenase, decarboxylating, at 4,556,493 to 4,557,476 _4043 PP_4044: PP_4044 - conserved protein of unknown function, at 4,557,643 to 4,557,846 _4044 PP_4045: PP_4045 - conserved protein of unknown function, at 4,557,889 to 4,558,155 _4045 PP_4046: PP_4046 - conserved protein of unknown function, at 4,558,201 to 4,559,163 _4046 PP_4047: PP_4047 - conserved protein of unknown function, at 4,559,179 to 4,560,135 _4047 PP_4048: PP_4048 - conserved protein of unknown function, at 4,560,145 to 4,561,548 _4048 Position (kb) 4558 4559 4560Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4557.316 kb on - strand, within PP_4043at 4557.447 kb on - strandat 4557.637 kb on + strandat 4557.684 kb on + strand, within PP_4044at 4557.684 kb on + strand, within PP_4044at 4557.684 kb on + strand, within PP_4044at 4557.685 kb on - strand, within PP_4044at 4557.718 kb on + strand, within PP_4044at 4557.718 kb on + strand, within PP_4044at 4557.718 kb on + strand, within PP_4044at 4557.718 kb on + strand, within PP_4044at 4557.718 kb on + strand, within PP_4044at 4557.719 kb on - strand, within PP_4044at 4557.719 kb on - strand, within PP_4044at 4557.719 kb on - strand, within PP_4044at 4557.719 kb on - strand, within PP_4044at 4557.719 kb on - strand, within PP_4044at 4557.753 kb on + strand, within PP_4044at 4557.754 kb on - strand, within PP_4044at 4557.952 kb on + strand, within PP_4045at 4557.957 kb on + strand, within PP_4045at 4557.958 kb on - strand, within PP_4045at 4558.168 kb on + strandat 4558.168 kb on + strandat 4558.169 kb on - strandat 4558.307 kb on + strand, within PP_4046at 4558.307 kb on + strand, within PP_4046at 4558.307 kb on + strand, within PP_4046at 4558.308 kb on - strand, within PP_4046at 4558.308 kb on - strand, within PP_4046at 4558.480 kb on + strand, within PP_4046at 4558.480 kb on + strand, within PP_4046at 4558.480 kb on + strand, within PP_4046at 4558.489 kb on + strand, within PP_4046at 4558.559 kb on + strand, within PP_4046at 4558.580 kb on + strand, within PP_4046at 4558.580 kb on + strand, within PP_4046at 4558.580 kb on + strand, within PP_4046at 4558.581 kb on - strand, within PP_4046at 4558.581 kb on - strand, within PP_4046at 4558.596 kb on - strand, within PP_4046at 4558.658 kb on + strand, within PP_4046at 4558.658 kb on + strand, within PP_4046at 4558.659 kb on - strand, within PP_4046at 4558.691 kb on + strand, within PP_4046at 4558.692 kb on - strand, within PP_4046at 4558.919 kb on + strand, within PP_4046at 4558.928 kb on + strand, within PP_4046at 4558.928 kb on + strand, within PP_4046at 4558.929 kb on - strand, within PP_4046at 4558.929 kb on - strand, within PP_4046at 4558.965 kb on - strand, within PP_4046at 4559.010 kb on + strand, within PP_4046at 4559.011 kb on - strand, within PP_4046at 4559.064 kb on + strand, within PP_4046at 4559.064 kb on + strand, within PP_4046at 4559.065 kb on - strand, within PP_4046at 4559.111 kb on + strandat 4559.112 kb on - strandat 4559.163 kb on + strandat 4559.164 kb on - strandat 4559.180 kb on + strandat 4559.181 kb on - strandat 4559.181 kb on - strandat 4559.181 kb on - strandat 4559.181 kb on - strandat 4559.182 kb on + strandat 4559.182 kb on + strandat 4559.183 kb on - strandat 4559.183 kb on - strandat 4559.183 kb on - strandat 4559.236 kb on + strandat 4559.263 kb on + strandat 4559.264 kb on - strandat 4559.281 kb on + strand, within PP_4047at 4559.281 kb on + strand, within PP_4047at 4559.282 kb on - strand, within PP_4047at 4559.337 kb on - strand, within PP_4047at 4559.415 kb on - strand, within PP_4047at 4559.432 kb on + strand, within PP_4047at 4559.433 kb on - strandat 4559.537 kb on + strand, within PP_4047at 4559.577 kb on + strand, within PP_4047at 4559.577 kb on + strand, within PP_4047at 4559.577 kb on + strand, within PP_4047at 4559.578 kb on - strand, within PP_4047at 4559.794 kb on + strand, within PP_4047at 4559.795 kb on - strand, within PP_4047at 4559.896 kb on + strand, within PP_4047at 4559.925 kb on + strandat 4559.926 kb on - strand, within PP_4047at 4559.926 kb on - strand, within PP_4047at 4559.998 kb on + strand, within PP_4047at 4559.999 kb on - strandat 4560.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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4,557,316 - PP_4043 0.84 -3.3
4,557,447 - -4.4
4,557,637 + +0.5
4,557,684 + PP_4044 0.20 +0.1
4,557,684 + PP_4044 0.20 +0.7
4,557,684 + PP_4044 0.20 -0.1
4,557,685 - PP_4044 0.21 +0.2
4,557,718 + PP_4044 0.37 +0.9
4,557,718 + PP_4044 0.37 -0.1
4,557,718 + PP_4044 0.37 +0.4
4,557,718 + PP_4044 0.37 -1.5
4,557,718 + PP_4044 0.37 -0.6
4,557,719 - PP_4044 0.37 +0.9
4,557,719 - PP_4044 0.37 -3.5
4,557,719 - PP_4044 0.37 +0.9
4,557,719 - PP_4044 0.37 +0.9
4,557,719 - PP_4044 0.37 -2.5
4,557,753 + PP_4044 0.54 +0.2
4,557,754 - PP_4044 0.54 +0.1
4,557,952 + PP_4045 0.24 -2.0
4,557,957 + PP_4045 0.25 -5.1
4,557,958 - PP_4045 0.26 -0.7
4,558,168 + -1.0
4,558,168 + -0.7
4,558,169 - +1.1
4,558,307 + PP_4046 0.11 -0.6
4,558,307 + PP_4046 0.11 +0.6
4,558,307 + PP_4046 0.11 -0.1
4,558,308 - PP_4046 0.11 -0.9
4,558,308 - PP_4046 0.11 +0.1
4,558,480 + PP_4046 0.29 +1.1
4,558,480 + PP_4046 0.29 -2.3
4,558,480 + PP_4046 0.29 -3.4
4,558,489 + PP_4046 0.30 -2.8
4,558,559 + PP_4046 0.37 +1.3
4,558,580 + PP_4046 0.39 +0.9
4,558,580 + PP_4046 0.39 -0.0
4,558,580 + PP_4046 0.39 -0.3
4,558,581 - PP_4046 0.39 -3.7
4,558,581 - PP_4046 0.39 -1.8
4,558,596 - PP_4046 0.41 +1.3
4,558,658 + PP_4046 0.47 -1.8
4,558,658 + PP_4046 0.47 +2.0
4,558,659 - PP_4046 0.48 -0.4
4,558,691 + PP_4046 0.51 +0.7
4,558,692 - PP_4046 0.51 +0.8
4,558,919 + PP_4046 0.75 -1.0
4,558,928 + PP_4046 0.75 +1.1
4,558,928 + PP_4046 0.75 -2.4
4,558,929 - PP_4046 0.76 -0.2
4,558,929 - PP_4046 0.76 -4.2
4,558,965 - PP_4046 0.79 +1.1
4,559,010 + PP_4046 0.84 +0.5
4,559,011 - PP_4046 0.84 -0.8
4,559,064 + PP_4046 0.90 -4.1
4,559,064 + PP_4046 0.90 +0.8
4,559,065 - PP_4046 0.90 +0.0
4,559,111 + +1.0
4,559,112 - -0.9
4,559,163 + -0.3
4,559,164 - +1.0
4,559,180 + +1.4
4,559,181 - +0.1
4,559,181 - +0.3
4,559,181 - -2.1
4,559,181 - +0.0
4,559,182 + +1.0
4,559,182 + +0.9
4,559,183 - +1.1
4,559,183 - -0.5
4,559,183 - -0.2
4,559,236 + -2.1
4,559,263 + +1.2
4,559,264 - +0.8
4,559,281 + PP_4047 0.11 -0.9
4,559,281 + PP_4047 0.11 -3.1
4,559,282 - PP_4047 0.11 +0.8
4,559,337 - PP_4047 0.17 -0.4
4,559,415 - PP_4047 0.25 -0.2
4,559,432 + PP_4047 0.26 -3.5
4,559,433 - +0.0
4,559,537 + PP_4047 0.37 +2.1
4,559,577 + PP_4047 0.42 +0.3
4,559,577 + PP_4047 0.42 -1.4
4,559,577 + PP_4047 0.42 +1.3
4,559,578 - PP_4047 0.42 +1.1
4,559,794 + PP_4047 0.64 +0.8
4,559,795 - PP_4047 0.64 -0.0
4,559,896 + PP_4047 0.75 -3.1
4,559,925 + +2.6
4,559,926 - PP_4047 0.78 -1.3
4,559,926 - PP_4047 0.78 -3.2
4,559,998 + PP_4047 0.86 -3.8
4,559,999 - -0.4
4,560,155 - -0.1

Or see this region's nucleotide sequence