Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3197 and PP_3198 are separated by 12 nucleotides PP_3198 and PP_3199 are separated by 139 nucleotides PP_3199 and PP_3200 are separated by 44 nucleotides
PP_3197: PP_3197 - Glyoxalase family protein, at 3,626,779 to 3,627,720
_3197
PP_3198: PP_3198 - Ferredoxin, 2Fe-2S, at 3,627,733 to 3,628,071
_3198
PP_3199: PP_3199 - putative Monooxygenase, at 3,628,211 to 3,629,335
_3199
PP_3200: PP_3200 - conserved exported protein of unknown function, at 3,629,380 to 3,631,092
_3200
Position (kb) 3628
3629
3630 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 3627.259 kb on + strand, within PP_3197 at 3627.259 kb on + strand, within PP_3197 at 3627.441 kb on + strand, within PP_3197 at 3627.839 kb on + strand, within PP_3198 at 3627.934 kb on + strand, within PP_3198 at 3627.934 kb on + strand at 3627.935 kb on - strand, within PP_3198 at 3628.043 kb on + strand at 3628.044 kb on - strand at 3628.146 kb on + strand at 3628.216 kb on + strand at 3628.216 kb on + strand at 3628.217 kb on - strand at 3628.335 kb on - strand, within PP_3199 at 3628.403 kb on + strand, within PP_3199 at 3628.442 kb on + strand, within PP_3199 at 3628.442 kb on + strand, within PP_3199 at 3628.443 kb on - strand, within PP_3199 at 3628.443 kb on - strand, within PP_3199 at 3628.443 kb on - strand, within PP_3199 at 3628.665 kb on - strand, within PP_3199 at 3628.808 kb on + strand, within PP_3199 at 3628.809 kb on - strand, within PP_3199 at 3628.809 kb on - strand, within PP_3199 at 3628.862 kb on + strand, within PP_3199 at 3628.862 kb on + strand, within PP_3199 at 3629.566 kb on - strand, within PP_3200 at 3629.592 kb on + strand, within PP_3200 at 3629.715 kb on + strand, within PP_3200 at 3629.715 kb on + strand, within PP_3200 at 3629.715 kb on + strand, within PP_3200 at 3629.716 kb on - strand, within PP_3200 at 3629.716 kb on - strand, within PP_3200 at 3629.719 kb on + strand at 3629.719 kb on + strand, within PP_3200 at 3629.719 kb on + strand, within PP_3200 at 3629.719 kb on + strand, within PP_3200 at 3629.720 kb on - strand, within PP_3200 at 3629.720 kb on - strand, within PP_3200 at 3629.720 kb on - strand, within PP_3200 at 3629.770 kb on + strand, within PP_3200 at 3629.770 kb on + strand, within PP_3200 at 3629.816 kb on - strand, within PP_3200 at 3629.816 kb on - strand, within PP_3200 at 3629.892 kb on + strand, within PP_3200 at 3629.893 kb on - strand, within PP_3200 at 3629.893 kb on - strand, within PP_3200 at 3629.948 kb on - strand, within PP_3200 at 3630.128 kb on - strand, within PP_3200 at 3630.128 kb on - strand, within PP_3200 at 3630.130 kb on + strand, within PP_3200 at 3630.131 kb on - strand at 3630.131 kb on - strand, within PP_3200 at 3630.131 kb on - strand, within PP_3200 at 3630.171 kb on + strand, within PP_3200 at 3630.175 kb on + strand, within PP_3200 at 3630.175 kb on + strand, within PP_3200 at 3630.175 kb on + strand, within PP_3200
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 3,627,259 + PP_3197 0.51 -1.9 3,627,259 + PP_3197 0.51 +0.9 3,627,441 + PP_3197 0.70 -0.4 3,627,839 + PP_3198 0.31 -3.0 3,627,934 + PP_3198 0.59 -0.6 3,627,934 + -1.0 3,627,935 - PP_3198 0.60 +1.1 3,628,043 + -0.4 3,628,044 - +0.1 3,628,146 + -0.4 3,628,216 + +0.1 3,628,216 + -0.0 3,628,217 - +2.7 3,628,335 - PP_3199 0.11 +1.1 3,628,403 + PP_3199 0.17 +0.4 3,628,442 + PP_3199 0.21 +1.6 3,628,442 + PP_3199 0.21 +0.9 3,628,443 - PP_3199 0.21 +0.8 3,628,443 - PP_3199 0.21 +0.5 3,628,443 - PP_3199 0.21 +1.7 3,628,665 - PP_3199 0.40 +1.2 3,628,808 + PP_3199 0.53 -2.4 3,628,809 - PP_3199 0.53 +1.6 3,628,809 - PP_3199 0.53 +0.6 3,628,862 + PP_3199 0.58 +1.2 3,628,862 + PP_3199 0.58 +0.7 3,629,566 - PP_3200 0.11 +1.1 3,629,592 + PP_3200 0.12 +1.0 3,629,715 + PP_3200 0.20 +1.4 3,629,715 + PP_3200 0.20 +2.5 3,629,715 + PP_3200 0.20 +1.3 3,629,716 - PP_3200 0.20 -0.0 3,629,716 - PP_3200 0.20 -0.8 3,629,719 + -0.3 3,629,719 + PP_3200 0.20 +1.9 3,629,719 + PP_3200 0.20 -2.4 3,629,719 + PP_3200 0.20 -1.2 3,629,720 - PP_3200 0.20 +0.2 3,629,720 - PP_3200 0.20 +1.2 3,629,720 - PP_3200 0.20 -0.4 3,629,770 + PP_3200 0.23 +0.7 3,629,770 + PP_3200 0.23 +1.1 3,629,816 - PP_3200 0.25 -3.8 3,629,816 - PP_3200 0.25 -4.3 3,629,892 + PP_3200 0.30 +0.6 3,629,893 - PP_3200 0.30 +0.9 3,629,893 - PP_3200 0.30 +0.9 3,629,948 - PP_3200 0.33 +0.4 3,630,128 - PP_3200 0.44 +1.0 3,630,128 - PP_3200 0.44 -0.1 3,630,130 + PP_3200 0.44 -1.8 3,630,131 - +3.9 3,630,131 - PP_3200 0.44 +0.4 3,630,131 - PP_3200 0.44 +1.3 3,630,171 + PP_3200 0.46 -1.7 3,630,175 + PP_3200 0.46 +0.1 3,630,175 + PP_3200 0.46 -0.3 3,630,175 + PP_3200 0.46 +0.9
Or see this region's nucleotide sequence