Strain Fitness in Pseudomonas putida KT2440 around PP_1090

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1088 and PP_1089 are separated by 67 nucleotidesPP_1089 and PP_1090 are separated by 366 nucleotidesPP_1090 and PP_1091 are separated by 70 nucleotidesPP_1091 and PP_1092 are separated by 104 nucleotidesPP_1092 and PP_1093 are separated by 4 nucleotides PP_1088: PP_1088 - Argininosuccinate synthase, at 1,246,970 to 1,248,187 _1088 PP_1089: PP_1089 - conserved protein of unknown function, at 1,248,255 to 1,248,737 _1089 PP_1090: PP_1090 - putative Virulence factors positive transcription regulator BvgA, at 1,249,104 to 1,249,727 _1090 PP_1091: PP_1091 - conserved protein of unknown function, at 1,249,798 to 1,249,974 _1091 PP_1092: PP_1092 - DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites, at 1,250,079 to 1,250,717 _1092 PP_1093: PP_1093 - putative electron transport complex protein, at 1,250,722 to 1,251,270 _1093 Position (kb) 1249 1250Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1248.149 kb on - strandat 1248.149 kb on - strandat 1248.149 kb on - strandat 1248.299 kb on - strandat 1248.541 kb on + strand, within PP_1089at 1248.542 kb on - strand, within PP_1089at 1248.542 kb on - strand, within PP_1089at 1248.542 kb on - strand, within PP_1089at 1248.542 kb on - strand, within PP_1089at 1248.553 kb on + strand, within PP_1089at 1248.622 kb on + strand, within PP_1089at 1248.622 kb on + strand, within PP_1089at 1248.622 kb on + strand, within PP_1089at 1248.623 kb on - strand, within PP_1089at 1248.623 kb on - strand, within PP_1089at 1248.737 kb on + strandat 1248.737 kb on + strandat 1248.737 kb on + strandat 1248.738 kb on - strandat 1248.738 kb on - strandat 1248.739 kb on + strandat 1248.739 kb on + strandat 1248.739 kb on + strandat 1248.739 kb on + strandat 1248.739 kb on + strandat 1248.740 kb on - strandat 1248.774 kb on + strandat 1248.895 kb on - strandat 1248.912 kb on - strandat 1248.967 kb on - strandat 1248.993 kb on - strandat 1249.001 kb on + strandat 1249.031 kb on + strandat 1249.092 kb on + strandat 1249.092 kb on + strandat 1249.110 kb on - strandat 1249.142 kb on - strandat 1249.179 kb on + strand, within PP_1090at 1249.179 kb on + strand, within PP_1090at 1249.211 kb on - strand, within PP_1090at 1249.326 kb on - strand, within PP_1090at 1249.333 kb on + strand, within PP_1090at 1249.402 kb on - strand, within PP_1090at 1249.442 kb on + strand, within PP_1090at 1249.470 kb on + strand, within PP_1090at 1249.471 kb on - strand, within PP_1090at 1249.617 kb on + strand, within PP_1090at 1249.617 kb on + strand, within PP_1090at 1249.617 kb on + strand, within PP_1090at 1249.618 kb on - strand, within PP_1090at 1249.618 kb on - strand, within PP_1090at 1249.618 kb on - strand, within PP_1090at 1249.618 kb on - strand, within PP_1090at 1249.625 kb on + strand, within PP_1090at 1249.640 kb on + strand, within PP_1090at 1249.641 kb on - strand, within PP_1090at 1249.641 kb on - strand, within PP_1090at 1249.644 kb on + strand, within PP_1090at 1249.644 kb on + strand, within PP_1090at 1249.644 kb on + strand, within PP_1090at 1249.645 kb on - strand, within PP_1090at 1249.645 kb on - strand, within PP_1090at 1249.645 kb on - strand, within PP_1090at 1249.785 kb on + strandat 1249.799 kb on + strandat 1249.963 kb on - strandat 1249.963 kb on - strandat 1249.963 kb on - strandat 1250.010 kb on + strandat 1250.010 kb on + strandat 1250.010 kb on + strandat 1250.011 kb on - strandat 1250.011 kb on - strandat 1250.013 kb on - strandat 1250.104 kb on + strandat 1250.104 kb on + strandat 1250.104 kb on + strandat 1250.165 kb on - strand, within PP_1092at 1250.207 kb on - strand, within PP_1092at 1250.217 kb on + strand, within PP_1092at 1250.282 kb on + strand, within PP_1092at 1250.297 kb on + strand, within PP_1092at 1250.297 kb on + strand, within PP_1092at 1250.298 kb on - strand, within PP_1092at 1250.407 kb on - strand, within PP_1092at 1250.448 kb on + strand, within PP_1092at 1250.448 kb on + strand, within PP_1092at 1250.448 kb on + strand, within PP_1092at 1250.448 kb on + strand, within PP_1092at 1250.449 kb on - strand, within PP_1092at 1250.449 kb on - strand, within PP_1092at 1250.449 kb on - strand, within PP_1092at 1250.449 kb on - strand, within PP_1092at 1250.474 kb on - strand, within PP_1092at 1250.474 kb on - strand, within PP_1092at 1250.494 kb on + strand, within PP_1092at 1250.494 kb on + strand, within PP_1092at 1250.495 kb on - strand, within PP_1092at 1250.495 kb on - strand, within PP_1092at 1250.524 kb on + strand, within PP_1092at 1250.524 kb on + strand, within PP_1092at 1250.524 kb on + strand, within PP_1092at 1250.524 kb on + strand, within PP_1092at 1250.525 kb on - strand, within PP_1092at 1250.525 kb on - strand, within PP_1092at 1250.525 kb on - strand, within PP_1092at 1250.525 kb on - strand, within PP_1092at 1250.525 kb on - strand, within PP_1092at 1250.641 kb on + strand, within PP_1092at 1250.642 kb on - strand, within PP_1092

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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1,248,149 - -2.2
1,248,149 - -2.7
1,248,149 - -2.2
1,248,299 - +1.7
1,248,541 + PP_1089 0.59 -4.3
1,248,542 - PP_1089 0.59 -3.9
1,248,542 - PP_1089 0.59 +1.8
1,248,542 - PP_1089 0.59 -4.1
1,248,542 - PP_1089 0.59 +0.6
1,248,553 + PP_1089 0.62 -3.4
1,248,622 + PP_1089 0.76 -3.8
1,248,622 + PP_1089 0.76 -0.7
1,248,622 + PP_1089 0.76 -4.6
1,248,623 - PP_1089 0.76 +0.0
1,248,623 - PP_1089 0.76 +1.0
1,248,737 + -3.3
1,248,737 + +0.5
1,248,737 + -1.0
1,248,738 - +0.8
1,248,738 - +1.1
1,248,739 + +0.5
1,248,739 + +0.5
1,248,739 + -0.2
1,248,739 + +0.5
1,248,739 + +0.4
1,248,740 - +2.2
1,248,774 + +0.3
1,248,895 - -3.6
1,248,912 - +0.0
1,248,967 - +1.5
1,248,993 - -3.7
1,249,001 + +1.1
1,249,031 + -3.1
1,249,092 + -1.3
1,249,092 + -3.0
1,249,110 - +1.0
1,249,142 - +0.8
1,249,179 + PP_1090 0.12 +1.6
1,249,179 + PP_1090 0.12 +2.3
1,249,211 - PP_1090 0.17 +0.2
1,249,326 - PP_1090 0.36 -1.3
1,249,333 + PP_1090 0.37 -0.2
1,249,402 - PP_1090 0.48 +1.3
1,249,442 + PP_1090 0.54 -2.9
1,249,470 + PP_1090 0.59 +1.1
1,249,471 - PP_1090 0.59 +0.7
1,249,617 + PP_1090 0.82 +1.2
1,249,617 + PP_1090 0.82 -0.7
1,249,617 + PP_1090 0.82 -0.1
1,249,618 - PP_1090 0.82 +0.9
1,249,618 - PP_1090 0.82 +0.3
1,249,618 - PP_1090 0.82 +1.4
1,249,618 - PP_1090 0.82 -3.8
1,249,625 + PP_1090 0.83 +0.7
1,249,640 + PP_1090 0.86 -3.5
1,249,641 - PP_1090 0.86 +1.1
1,249,641 - PP_1090 0.86 +1.1
1,249,644 + PP_1090 0.87 -0.2
1,249,644 + PP_1090 0.87 +0.8
1,249,644 + PP_1090 0.87 -1.0
1,249,645 - PP_1090 0.87 +0.6
1,249,645 - PP_1090 0.87 +2.1
1,249,645 - PP_1090 0.87 +2.5
1,249,785 + +0.3
1,249,799 + -0.4
1,249,963 - +1.7
1,249,963 - +0.9
1,249,963 - -1.4
1,250,010 + -2.5
1,250,010 + -2.4
1,250,010 + -0.2
1,250,011 - -1.5
1,250,011 - +0.6
1,250,013 - -0.4
1,250,104 + -0.1
1,250,104 + -1.2
1,250,104 + +0.3
1,250,165 - PP_1092 0.13 +0.2
1,250,207 - PP_1092 0.20 +0.1
1,250,217 + PP_1092 0.22 -3.3
1,250,282 + PP_1092 0.32 -1.9
1,250,297 + PP_1092 0.34 -3.0
1,250,297 + PP_1092 0.34 -0.1
1,250,298 - PP_1092 0.34 +1.4
1,250,407 - PP_1092 0.51 -0.7
1,250,448 + PP_1092 0.58 -3.2
1,250,448 + PP_1092 0.58 -2.2
1,250,448 + PP_1092 0.58 -1.3
1,250,448 + PP_1092 0.58 -1.1
1,250,449 - PP_1092 0.58 -0.6
1,250,449 - PP_1092 0.58 -0.1
1,250,449 - PP_1092 0.58 -0.6
1,250,449 - PP_1092 0.58 +3.3
1,250,474 - PP_1092 0.62 -0.5
1,250,474 - PP_1092 0.62 -3.3
1,250,494 + PP_1092 0.65 -0.2
1,250,494 + PP_1092 0.65 -0.3
1,250,495 - PP_1092 0.65 +0.7
1,250,495 - PP_1092 0.65 +1.0
1,250,524 + PP_1092 0.70 +1.2
1,250,524 + PP_1092 0.70 -0.5
1,250,524 + PP_1092 0.70 -0.8
1,250,524 + PP_1092 0.70 -1.5
1,250,525 - PP_1092 0.70 +1.5
1,250,525 - PP_1092 0.70 +0.9
1,250,525 - PP_1092 0.70 -0.1
1,250,525 - PP_1092 0.70 +1.7
1,250,525 - PP_1092 0.70 -0.2
1,250,641 + PP_1092 0.88 -0.8
1,250,642 - PP_1092 0.88 -1.4

Or see this region's nucleotide sequence