Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4420 and PP_5679 are separated by 172 nucleotides PP_5679 and PP_4421 are separated by 233 nucleotides
PP_4420: PP_4420 - transposase, at 5,014,543 to 5,015,352
_4420
PP_5679: PP_5679 - protein of unknown function, at 5,015,525 to 5,015,737
_5679
PP_4421: PP_4421 - putative aminotransferase, at 5,015,971 to 5,017,362
_4421
Position (kb) 5015
5016 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5014.568 kb on - strand at 5014.570 kb on + strand at 5014.571 kb on - strand at 5014.571 kb on - strand at 5014.571 kb on - strand at 5014.571 kb on - strand at 5014.584 kb on + strand at 5014.584 kb on + strand at 5014.584 kb on + strand at 5014.675 kb on - strand, within PP_4420 at 5014.777 kb on + strand, within PP_4420 at 5014.777 kb on + strand, within PP_4420 at 5014.777 kb on + strand, within PP_4420 at 5014.778 kb on - strand, within PP_4420 at 5014.778 kb on - strand, within PP_4420 at 5014.778 kb on - strand, within PP_4420 at 5014.778 kb on - strand, within PP_4420 at 5014.778 kb on - strand, within PP_4420 at 5014.783 kb on + strand, within PP_4420 at 5014.784 kb on - strand, within PP_4420 at 5014.822 kb on - strand, within PP_4420 at 5014.882 kb on + strand, within PP_4420 at 5014.882 kb on + strand, within PP_4420 at 5014.883 kb on - strand, within PP_4420 at 5014.883 kb on - strand at 5014.909 kb on + strand, within PP_4420 at 5014.910 kb on - strand, within PP_4420 at 5014.910 kb on - strand, within PP_4420 at 5014.910 kb on - strand, within PP_4420 at 5014.933 kb on + strand, within PP_4420 at 5014.933 kb on + strand, within PP_4420 at 5014.933 kb on + strand, within PP_4420 at 5015.011 kb on - strand, within PP_4420 at 5015.039 kb on + strand, within PP_4420 at 5015.039 kb on + strand, within PP_4420 at 5015.039 kb on + strand, within PP_4420 at 5015.039 kb on + strand, within PP_4420 at 5015.040 kb on - strand, within PP_4420 at 5015.040 kb on - strand, within PP_4420 at 5015.068 kb on + strand, within PP_4420 at 5015.069 kb on - strand, within PP_4420 at 5015.121 kb on + strand, within PP_4420 at 5015.122 kb on - strand at 5015.122 kb on - strand, within PP_4420 at 5015.136 kb on + strand, within PP_4420 at 5015.148 kb on + strand, within PP_4420 at 5015.149 kb on - strand, within PP_4420 at 5015.168 kb on + strand, within PP_4420 at 5015.169 kb on - strand, within PP_4420 at 5015.169 kb on - strand, within PP_4420 at 5015.175 kb on + strand, within PP_4420 at 5015.210 kb on - strand, within PP_4420 at 5015.210 kb on - strand, within PP_4420 at 5015.249 kb on - strand, within PP_4420 at 5015.263 kb on + strand, within PP_4420 at 5015.264 kb on - strand, within PP_4420 at 5015.264 kb on - strand, within PP_4420 at 5015.357 kb on + strand at 5015.357 kb on + strand at 5015.357 kb on + strand at 5015.357 kb on + strand at 5015.357 kb on + strand at 5015.358 kb on - strand at 5015.363 kb on + strand at 5015.363 kb on + strand at 5015.363 kb on + strand at 5015.364 kb on - strand at 5015.364 kb on - strand at 5015.364 kb on - strand at 5015.428 kb on - strand at 5015.472 kb on + strand at 5015.472 kb on + strand at 5015.472 kb on + strand at 5015.472 kb on + strand at 5015.472 kb on + strand at 5015.472 kb on + strand at 5015.473 kb on - strand at 5015.473 kb on - strand at 5015.473 kb on - strand at 5015.473 kb on - strand at 5015.473 kb on - strand at 5015.517 kb on - strand at 5015.517 kb on - strand at 5015.526 kb on + strand at 5015.526 kb on + strand at 5015.526 kb on + strand at 5015.526 kb on + strand at 5015.527 kb on - strand at 5015.527 kb on - strand at 5015.527 kb on - strand at 5015.527 kb on - strand at 5015.527 kb on - strand at 5015.527 kb on - strand at 5015.566 kb on - strand, within PP_5679 at 5015.566 kb on - strand, within PP_5679 at 5015.595 kb on + strand, within PP_5679 at 5015.595 kb on + strand, within PP_5679 at 5015.595 kb on + strand, within PP_5679 at 5015.595 kb on + strand, within PP_5679 at 5015.596 kb on - strand, within PP_5679 at 5015.596 kb on - strand, within PP_5679 at 5015.596 kb on - strand, within PP_5679 at 5015.596 kb on - strand, within PP_5679 at 5015.695 kb on + strand, within PP_5679 at 5015.695 kb on + strand, within PP_5679 at 5015.695 kb on + strand, within PP_5679 at 5015.695 kb on + strand, within PP_5679 at 5015.695 kb on + strand, within PP_5679 at 5015.696 kb on - strand, within PP_5679 at 5015.696 kb on - strand, within PP_5679 at 5015.696 kb on - strand, within PP_5679 at 5015.696 kb on - strand, within PP_5679 at 5015.696 kb on - strand, within PP_5679 at 5015.696 kb on - strand, within PP_5679 at 5015.696 kb on - strand, within PP_5679 at 5015.697 kb on + strand, within PP_5679 at 5015.697 kb on + strand, within PP_5679 at 5015.697 kb on + strand, within PP_5679 at 5015.697 kb on + strand, within PP_5679 at 5015.698 kb on - strand, within PP_5679 at 5015.698 kb on - strand, within PP_5679 at 5015.698 kb on - strand, within PP_5679 at 5015.698 kb on - strand, within PP_5679 at 5015.698 kb on - strand, within PP_5679 at 5015.698 kb on - strand, within PP_5679 at 5015.698 kb on - strand, within PP_5679 at 5015.702 kb on - strand, within PP_5679 at 5015.740 kb on + strand at 5015.740 kb on + strand at 5015.773 kb on + strand at 5015.773 kb on + strand at 5015.773 kb on + strand at 5015.773 kb on + strand at 5015.774 kb on - strand at 5015.774 kb on - strand at 5015.774 kb on - strand at 5015.774 kb on - strand at 5015.825 kb on + strand at 5015.825 kb on + strand at 5015.826 kb on - strand at 5015.826 kb on - strand at 5015.826 kb on - strand at 5015.826 kb on - strand at 5015.826 kb on - strand at 5015.826 kb on - strand at 5015.826 kb on - strand at 5015.841 kb on - strand at 5015.841 kb on - strand at 5015.884 kb on + strand at 5015.885 kb on - strand at 5015.890 kb on + strand at 5015.890 kb on + strand at 5015.890 kb on + strand at 5015.891 kb on - strand at 5015.891 kb on - strand at 5015.891 kb on - strand at 5015.891 kb on - strand at 5015.911 kb on + strand at 5015.924 kb on - strand at 5015.937 kb on + strand at 5015.937 kb on + strand at 5015.938 kb on - strand at 5015.938 kb on - strand at 5016.093 kb on + strand at 5016.281 kb on + strand, within PP_4421 at 5016.282 kb on - strand, within PP_4421 at 5016.282 kb on - strand, within PP_4421 at 5016.282 kb on - strand, within PP_4421 at 5016.383 kb on + strand, within PP_4421 at 5016.384 kb on - strand, within PP_4421 at 5016.432 kb on + strand, within PP_4421 at 5016.432 kb on + strand, within PP_4421 at 5016.433 kb on - strand, within PP_4421 at 5016.433 kb on - strand, within PP_4421 at 5016.433 kb on - strand, within PP_4421 at 5016.433 kb on - strand, within PP_4421 at 5016.434 kb on + strand, within PP_4421 at 5016.434 kb on + strand, within PP_4421 at 5016.434 kb on + strand, within PP_4421 at 5016.434 kb on + strand, within PP_4421 at 5016.434 kb on + strand, within PP_4421 at 5016.434 kb on + strand, within PP_4421 at 5016.434 kb on + strand, within PP_4421 at 5016.435 kb on - strand, within PP_4421 at 5016.435 kb on - strand, within PP_4421 at 5016.435 kb on - strand, within PP_4421 at 5016.435 kb on - strand, within PP_4421 at 5016.435 kb on - strand, within PP_4421 at 5016.435 kb on - strand, within PP_4421 at 5016.435 kb on - strand, within PP_4421 at 5016.473 kb on + strand, within PP_4421 at 5016.492 kb on + strand, within PP_4421 at 5016.492 kb on + strand, within PP_4421 at 5016.493 kb on - strand, within PP_4421 at 5016.496 kb on + strand, within PP_4421 at 5016.496 kb on + strand, within PP_4421 at 5016.497 kb on - strand, within PP_4421 at 5016.524 kb on + strand, within PP_4421 at 5016.524 kb on + strand, within PP_4421 at 5016.524 kb on + strand, within PP_4421 at 5016.525 kb on - strand, within PP_4421 at 5016.525 kb on - strand, within PP_4421 at 5016.525 kb on - strand, within PP_4421 at 5016.525 kb on - strand, within PP_4421 at 5016.525 kb on - strand, within PP_4421 at 5016.552 kb on + strand, within PP_4421 at 5016.553 kb on - strand, within PP_4421 at 5016.610 kb on + strand, within PP_4421 at 5016.610 kb on + strand, within PP_4421 at 5016.632 kb on + strand, within PP_4421 at 5016.632 kb on + strand, within PP_4421 at 5016.632 kb on + strand, within PP_4421 at 5016.633 kb on - strand, within PP_4421 at 5016.651 kb on + strand, within PP_4421 at 5016.652 kb on - strand, within PP_4421 at 5016.652 kb on - strand, within PP_4421 at 5016.654 kb on + strand, within PP_4421 at 5016.654 kb on + strand, within PP_4421 at 5016.654 kb on + strand, within PP_4421
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 5,014,568 - +1.4 5,014,570 + +1.8 5,014,571 - -1.3 5,014,571 - -1.6 5,014,571 - +2.3 5,014,571 - -3.9 5,014,584 + +0.3 5,014,584 + -1.1 5,014,584 + +0.9 5,014,675 - PP_4420 0.16 -1.7 5,014,777 + PP_4420 0.29 -2.9 5,014,777 + PP_4420 0.29 -2.0 5,014,777 + PP_4420 0.29 +0.5 5,014,778 - PP_4420 0.29 +1.8 5,014,778 - PP_4420 0.29 +1.1 5,014,778 - PP_4420 0.29 +0.1 5,014,778 - PP_4420 0.29 -1.4 5,014,778 - PP_4420 0.29 +1.4 5,014,783 + PP_4420 0.30 +1.0 5,014,784 - PP_4420 0.30 +2.3 5,014,822 - PP_4420 0.34 -3.9 5,014,882 + PP_4420 0.42 -2.2 5,014,882 + PP_4420 0.42 +0.5 5,014,883 - PP_4420 0.42 +0.8 5,014,883 - -1.0 5,014,909 + PP_4420 0.45 -3.2 5,014,910 - PP_4420 0.45 +1.0 5,014,910 - PP_4420 0.45 -1.1 5,014,910 - PP_4420 0.45 -3.3 5,014,933 + PP_4420 0.48 -3.2 5,014,933 + PP_4420 0.48 +1.0 5,014,933 + PP_4420 0.48 -2.1 5,015,011 - PP_4420 0.58 +0.9 5,015,039 + PP_4420 0.61 -0.9 5,015,039 + PP_4420 0.61 -0.1 5,015,039 + PP_4420 0.61 -1.5 5,015,039 + PP_4420 0.61 +1.8 5,015,040 - PP_4420 0.61 +0.6 5,015,040 - PP_4420 0.61 -0.6 5,015,068 + PP_4420 0.65 -3.3 5,015,069 - PP_4420 0.65 -2.9 5,015,121 + PP_4420 0.71 -4.1 5,015,122 - +1.6 5,015,122 - PP_4420 0.71 -0.2 5,015,136 + PP_4420 0.73 +0.8 5,015,148 + PP_4420 0.75 +1.3 5,015,149 - PP_4420 0.75 -2.6 5,015,168 + PP_4420 0.77 +0.7 5,015,169 - PP_4420 0.77 +0.6 5,015,169 - PP_4420 0.77 -3.9 5,015,175 + PP_4420 0.78 -0.0 5,015,210 - PP_4420 0.82 +1.0 5,015,210 - PP_4420 0.82 +0.6 5,015,249 - PP_4420 0.87 +0.2 5,015,263 + PP_4420 0.89 -1.2 5,015,264 - PP_4420 0.89 +1.0 5,015,264 - PP_4420 0.89 -2.3 5,015,357 + +0.7 5,015,357 + -4.0 5,015,357 + -2.5 5,015,357 + -0.4 5,015,357 + -0.9 5,015,358 - -3.2 5,015,363 + +1.9 5,015,363 + +1.8 5,015,363 + -0.8 5,015,364 - -0.2 5,015,364 - -0.8 5,015,364 - +1.1 5,015,428 - -3.1 5,015,472 + -3.0 5,015,472 + +0.5 5,015,472 + +1.0 5,015,472 + +0.3 5,015,472 + +0.1 5,015,472 + +0.7 5,015,473 - +0.4 5,015,473 - -3.0 5,015,473 - +0.8 5,015,473 - +1.0 5,015,473 - -0.7 5,015,517 - -3.5 5,015,517 - -0.6 5,015,526 + +0.5 5,015,526 + -3.2 5,015,526 + -2.4 5,015,526 + -1.1 5,015,527 - -3.1 5,015,527 - +2.2 5,015,527 - -0.3 5,015,527 - -1.4 5,015,527 - -3.1 5,015,527 - +0.8 5,015,566 - PP_5679 0.19 +2.0 5,015,566 - PP_5679 0.19 +1.4 5,015,595 + PP_5679 0.33 -3.5 5,015,595 + PP_5679 0.33 +0.7 5,015,595 + PP_5679 0.33 +1.6 5,015,595 + PP_5679 0.33 -4.1 5,015,596 - PP_5679 0.33 -0.4 5,015,596 - PP_5679 0.33 -4.1 5,015,596 - PP_5679 0.33 -3.5 5,015,596 - PP_5679 0.33 -3.6 5,015,695 + PP_5679 0.80 +2.1 5,015,695 + PP_5679 0.80 -1.0 5,015,695 + PP_5679 0.80 -0.8 5,015,695 + PP_5679 0.80 -3.1 5,015,695 + PP_5679 0.80 -1.7 5,015,696 - PP_5679 0.80 +0.1 5,015,696 - PP_5679 0.80 -0.8 5,015,696 - PP_5679 0.80 +2.0 5,015,696 - PP_5679 0.80 -1.7 5,015,696 - PP_5679 0.80 -0.9 5,015,696 - PP_5679 0.80 -1.1 5,015,696 - PP_5679 0.80 +0.3 5,015,697 + PP_5679 0.81 -0.0 5,015,697 + PP_5679 0.81 -0.1 5,015,697 + PP_5679 0.81 -2.8 5,015,697 + PP_5679 0.81 -3.0 5,015,698 - PP_5679 0.81 -3.7 5,015,698 - PP_5679 0.81 +1.5 5,015,698 - PP_5679 0.81 -3.2 5,015,698 - PP_5679 0.81 -1.0 5,015,698 - PP_5679 0.81 -1.0 5,015,698 - PP_5679 0.81 +0.4 5,015,698 - PP_5679 0.81 +0.7 5,015,702 - PP_5679 0.83 -1.9 5,015,740 + +0.5 5,015,740 + +1.7 5,015,773 + +1.3 5,015,773 + -3.5 5,015,773 + -2.9 5,015,773 + -2.6 5,015,774 - -0.3 5,015,774 - -0.1 5,015,774 - -3.8 5,015,774 - +1.1 5,015,825 + -3.0 5,015,825 + -2.6 5,015,826 - -0.4 5,015,826 - -1.0 5,015,826 - -0.1 5,015,826 - +0.7 5,015,826 - +1.5 5,015,826 - -3.3 5,015,826 - +0.8 5,015,841 - +0.5 5,015,841 - +0.6 5,015,884 + -1.3 5,015,885 - +1.1 5,015,890 + +0.9 5,015,890 + +1.6 5,015,890 + -2.6 5,015,891 - +0.7 5,015,891 - -2.7 5,015,891 - +0.6 5,015,891 - +1.8 5,015,911 + -0.2 5,015,924 - +1.0 5,015,937 + -2.1 5,015,937 + +0.0 5,015,938 - -1.7 5,015,938 - +2.2 5,016,093 + +0.9 5,016,281 + PP_4421 0.22 -2.2 5,016,282 - PP_4421 0.22 +0.6 5,016,282 - PP_4421 0.22 +0.4 5,016,282 - PP_4421 0.22 -1.1 5,016,383 + PP_4421 0.30 -1.1 5,016,384 - PP_4421 0.30 +0.8 5,016,432 + PP_4421 0.33 +1.1 5,016,432 + PP_4421 0.33 -3.2 5,016,433 - PP_4421 0.33 -1.8 5,016,433 - PP_4421 0.33 -2.5 5,016,433 - PP_4421 0.33 -2.9 5,016,433 - PP_4421 0.33 +3.3 5,016,434 + PP_4421 0.33 -0.8 5,016,434 + PP_4421 0.33 -2.5 5,016,434 + PP_4421 0.33 +2.9 5,016,434 + PP_4421 0.33 -2.8 5,016,434 + PP_4421 0.33 -1.0 5,016,434 + PP_4421 0.33 -2.0 5,016,434 + PP_4421 0.33 +1.9 5,016,435 - PP_4421 0.33 +1.0 5,016,435 - PP_4421 0.33 -1.1 5,016,435 - PP_4421 0.33 -3.6 5,016,435 - PP_4421 0.33 -3.4 5,016,435 - PP_4421 0.33 -0.5 5,016,435 - PP_4421 0.33 +0.8 5,016,435 - PP_4421 0.33 -4.0 5,016,473 + PP_4421 0.36 -0.3 5,016,492 + PP_4421 0.37 -2.3 5,016,492 + PP_4421 0.37 -1.5 5,016,493 - PP_4421 0.38 -0.2 5,016,496 + PP_4421 0.38 -2.8 5,016,496 + PP_4421 0.38 +0.8 5,016,497 - PP_4421 0.38 +0.7 5,016,524 + PP_4421 0.40 -3.0 5,016,524 + PP_4421 0.40 +0.5 5,016,524 + PP_4421 0.40 +1.7 5,016,525 - PP_4421 0.40 -0.5 5,016,525 - PP_4421 0.40 +1.9 5,016,525 - PP_4421 0.40 +0.5 5,016,525 - PP_4421 0.40 -1.1 5,016,525 - PP_4421 0.40 -0.3 5,016,552 + PP_4421 0.42 +0.0 5,016,553 - PP_4421 0.42 +0.9 5,016,610 + PP_4421 0.46 -4.0 5,016,610 + PP_4421 0.46 -0.0 5,016,632 + PP_4421 0.47 +1.5 5,016,632 + PP_4421 0.47 +1.0 5,016,632 + PP_4421 0.47 +0.3 5,016,633 - PP_4421 0.48 -0.1 5,016,651 + PP_4421 0.49 -1.1 5,016,652 - PP_4421 0.49 +0.5 5,016,652 - PP_4421 0.49 -2.3 5,016,654 + PP_4421 0.49 +1.6 5,016,654 + PP_4421 0.49 +1.6 5,016,654 + PP_4421 0.49 -3.1
Or see this region's nucleotide sequence