Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5173 and PP_5174 overlap by 4 nucleotides PP_5174 and PP_5175 overlap by 4 nucleotides
PP_5173: PP_5173 - RND efflux transporter, at 5,897,834 to 5,900,887
_5173
PP_5174: PP_5174 - Efflux membrane fusion protein, RND family, at 5,900,884 to 5,901,951
_5174
PP_5175: PP_5175 - HlyD family secretion protein, at 5,901,948 to 5,903,036
_5175
Position (kb) 5900
5901
5902 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5900.052 kb on + strand, within PP_5173 at 5900.185 kb on + strand, within PP_5173 at 5900.185 kb on + strand, within PP_5173 at 5900.185 kb on + strand, within PP_5173 at 5900.186 kb on - strand, within PP_5173 at 5900.186 kb on - strand, within PP_5173 at 5900.320 kb on - strand, within PP_5173 at 5900.320 kb on - strand, within PP_5173 at 5900.320 kb on - strand, within PP_5173 at 5900.403 kb on + strand, within PP_5173 at 5900.441 kb on - strand, within PP_5173 at 5900.448 kb on + strand, within PP_5173 at 5900.448 kb on + strand, within PP_5173 at 5900.448 kb on + strand, within PP_5173 at 5900.448 kb on + strand, within PP_5173 at 5900.448 kb on + strand, within PP_5173 at 5900.449 kb on - strand, within PP_5173 at 5900.449 kb on - strand, within PP_5173 at 5900.449 kb on - strand, within PP_5173 at 5900.462 kb on + strand, within PP_5173 at 5900.462 kb on + strand, within PP_5173 at 5900.462 kb on + strand, within PP_5173 at 5900.463 kb on - strand, within PP_5173 at 5900.463 kb on - strand, within PP_5173 at 5900.463 kb on - strand, within PP_5173 at 5900.596 kb on - strand at 5900.601 kb on + strand at 5900.601 kb on + strand at 5900.602 kb on - strand at 5900.602 kb on - strand at 5900.602 kb on - strand at 5900.602 kb on - strand at 5900.628 kb on + strand at 5900.628 kb on + strand at 5900.641 kb on - strand at 5900.641 kb on - strand at 5900.687 kb on - strand at 5900.695 kb on - strand at 5900.790 kb on + strand at 5900.829 kb on + strand at 5900.829 kb on + strand at 5901.048 kb on + strand, within PP_5174 at 5901.216 kb on + strand, within PP_5174 at 5901.217 kb on - strand, within PP_5174 at 5901.429 kb on + strand, within PP_5174 at 5901.464 kb on + strand at 5901.465 kb on - strand, within PP_5174 at 5901.572 kb on - strand, within PP_5174 at 5901.584 kb on + strand, within PP_5174 at 5901.584 kb on + strand, within PP_5174 at 5901.584 kb on + strand, within PP_5174 at 5901.584 kb on + strand, within PP_5174 at 5901.585 kb on - strand, within PP_5174 at 5901.585 kb on - strand, within PP_5174 at 5901.898 kb on - strand at 5901.951 kb on + strand at 5901.952 kb on - strand at 5901.952 kb on - strand at 5901.952 kb on - strand at 5901.952 kb on - strand at 5901.952 kb on - strand at 5901.987 kb on + strand at 5901.988 kb on - strand at 5901.988 kb on - strand at 5902.029 kb on + strand at 5902.030 kb on - strand at 5902.266 kb on + strand, within PP_5175 at 5902.278 kb on + strand, within PP_5175 at 5902.320 kb on + strand, within PP_5175 at 5902.320 kb on + strand, within PP_5175 at 5902.368 kb on + strand, within PP_5175 at 5902.408 kb on + strand, within PP_5175 at 5902.408 kb on + strand, within PP_5175 at 5902.409 kb on - strand, within PP_5175 at 5902.540 kb on + strand, within PP_5175 at 5902.630 kb on + strand, within PP_5175 at 5902.630 kb on + strand, within PP_5175 at 5902.630 kb on + strand, within PP_5175 at 5902.631 kb on - strand, within PP_5175 at 5902.631 kb on - strand, within PP_5175 at 5902.631 kb on - strand, within PP_5175 at 5902.722 kb on + strand, within PP_5175 at 5902.722 kb on + strand, within PP_5175 at 5902.924 kb on - strand, within PP_5175
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 5,900,052 + PP_5173 0.73 +0.3 5,900,185 + PP_5173 0.77 +1.6 5,900,185 + PP_5173 0.77 +1.2 5,900,185 + PP_5173 0.77 +1.0 5,900,186 - PP_5173 0.77 -2.1 5,900,186 - PP_5173 0.77 +0.6 5,900,320 - PP_5173 0.81 -3.8 5,900,320 - PP_5173 0.81 +1.7 5,900,320 - PP_5173 0.81 -3.4 5,900,403 + PP_5173 0.84 +0.3 5,900,441 - PP_5173 0.85 -3.9 5,900,448 + PP_5173 0.86 -3.6 5,900,448 + PP_5173 0.86 +0.3 5,900,448 + PP_5173 0.86 +0.4 5,900,448 + PP_5173 0.86 +1.2 5,900,448 + PP_5173 0.86 +0.5 5,900,449 - PP_5173 0.86 +0.1 5,900,449 - PP_5173 0.86 -2.5 5,900,449 - PP_5173 0.86 +1.5 5,900,462 + PP_5173 0.86 -0.5 5,900,462 + PP_5173 0.86 +1.1 5,900,462 + PP_5173 0.86 -4.5 5,900,463 - PP_5173 0.86 +0.3 5,900,463 - PP_5173 0.86 -2.7 5,900,463 - PP_5173 0.86 -3.8 5,900,596 - +1.8 5,900,601 + -0.5 5,900,601 + +0.0 5,900,602 - +0.9 5,900,602 - +0.8 5,900,602 - -2.8 5,900,602 - +0.0 5,900,628 + -3.5 5,900,628 + -2.0 5,900,641 - -2.3 5,900,641 - -0.2 5,900,687 - +1.7 5,900,695 - +0.6 5,900,790 + -2.4 5,900,829 + -2.9 5,900,829 + +1.4 5,901,048 + PP_5174 0.15 -4.3 5,901,216 + PP_5174 0.31 +0.8 5,901,217 - PP_5174 0.31 +0.2 5,901,429 + PP_5174 0.51 +2.0 5,901,464 + +0.0 5,901,465 - PP_5174 0.54 +0.3 5,901,572 - PP_5174 0.64 +1.9 5,901,584 + PP_5174 0.66 -2.7 5,901,584 + PP_5174 0.66 +1.7 5,901,584 + PP_5174 0.66 +1.7 5,901,584 + PP_5174 0.66 +1.3 5,901,585 - PP_5174 0.66 +1.0 5,901,585 - PP_5174 0.66 -2.4 5,901,898 - +1.3 5,901,951 + +1.9 5,901,952 - +1.0 5,901,952 - +1.0 5,901,952 - +1.5 5,901,952 - +1.1 5,901,952 - -3.7 5,901,987 + +1.0 5,901,988 - +3.6 5,901,988 - +0.6 5,902,029 + -3.3 5,902,030 - +0.5 5,902,266 + PP_5175 0.29 +2.1 5,902,278 + PP_5175 0.30 -1.4 5,902,320 + PP_5175 0.34 -2.3 5,902,320 + PP_5175 0.34 -1.1 5,902,368 + PP_5175 0.39 -2.0 5,902,408 + PP_5175 0.42 +1.1 5,902,408 + PP_5175 0.42 -1.5 5,902,409 - PP_5175 0.42 -2.9 5,902,540 + PP_5175 0.54 -1.9 5,902,630 + PP_5175 0.63 -3.8 5,902,630 + PP_5175 0.63 +1.6 5,902,630 + PP_5175 0.63 -3.3 5,902,631 - PP_5175 0.63 -1.0 5,902,631 - PP_5175 0.63 -0.4 5,902,631 - PP_5175 0.63 -2.4 5,902,722 + PP_5175 0.71 +2.0 5,902,722 + PP_5175 0.71 +1.5 5,902,924 - PP_5175 0.90 +1.9
Or see this region's nucleotide sequence