Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5125 and PP_5126 are separated by 3 nucleotides PP_5126 and PP_5127 are separated by 121 nucleotides PP_5127 and PP_5128 are separated by 270 nucleotides
PP_5125: PP_5125 - Formamidopyrimidine-DNA glycosylase, at 5,846,019 to 5,846,831
_5125
PP_5126: PP_5126 - conserved protein of unknown function containing an HDOD domain, at 5,846,835 to 5,847,707
_5126
PP_5127: PP_5127 - ribosomal RNA large subunit methyltransferase I, at 5,847,829 to 5,849,025
_5127
PP_5128: PP_5128 - Dihydroxy-acid dehydratase, at 5,849,296 to 5,851,137
_5128
Position (kb) 5847
5848
5849
5850 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5846.902 kb on + strand at 5846.902 kb on + strand at 5846.903 kb on - strand at 5846.981 kb on + strand at 5846.981 kb on + strand, within PP_5126 at 5846.981 kb on + strand, within PP_5126 at 5846.982 kb on - strand, within PP_5126 at 5847.044 kb on + strand, within PP_5126 at 5847.045 kb on - strand, within PP_5126 at 5847.133 kb on + strand, within PP_5126 at 5847.134 kb on - strand, within PP_5126 at 5847.134 kb on - strand, within PP_5126 at 5847.211 kb on + strand, within PP_5126 at 5847.212 kb on - strand, within PP_5126 at 5847.212 kb on - strand, within PP_5126 at 5847.212 kb on - strand, within PP_5126 at 5847.212 kb on - strand, within PP_5126 at 5847.212 kb on - strand, within PP_5126 at 5847.212 kb on - strand, within PP_5126 at 5847.235 kb on + strand, within PP_5126 at 5847.236 kb on - strand, within PP_5126 at 5847.293 kb on + strand, within PP_5126 at 5847.293 kb on + strand, within PP_5126 at 5847.293 kb on + strand, within PP_5126 at 5847.293 kb on + strand, within PP_5126 at 5847.294 kb on - strand, within PP_5126 at 5847.295 kb on + strand, within PP_5126 at 5847.295 kb on + strand, within PP_5126 at 5847.295 kb on + strand, within PP_5126 at 5847.296 kb on - strand, within PP_5126 at 5847.296 kb on - strand, within PP_5126 at 5847.296 kb on - strand, within PP_5126 at 5847.316 kb on - strand, within PP_5126 at 5847.323 kb on + strand, within PP_5126 at 5847.458 kb on + strand, within PP_5126 at 5847.459 kb on - strand, within PP_5126 at 5847.462 kb on + strand, within PP_5126 at 5847.463 kb on - strand, within PP_5126 at 5847.463 kb on - strand, within PP_5126 at 5847.463 kb on - strand, within PP_5126 at 5847.463 kb on - strand, within PP_5126 at 5847.463 kb on - strand, within PP_5126 at 5847.607 kb on + strand, within PP_5126 at 5847.607 kb on + strand, within PP_5126 at 5847.608 kb on - strand, within PP_5126 at 5847.608 kb on - strand, within PP_5126 at 5847.608 kb on - strand, within PP_5126 at 5847.608 kb on - strand, within PP_5126 at 5847.608 kb on - strand, within PP_5126 at 5847.608 kb on - strand, within PP_5126 at 5847.707 kb on + strand at 5847.707 kb on + strand at 5847.707 kb on + strand at 5847.707 kb on + strand at 5847.708 kb on - strand at 5847.708 kb on - strand at 5847.708 kb on - strand at 5847.708 kb on - strand at 5847.708 kb on - strand at 5847.739 kb on - strand at 5847.746 kb on + strand at 5847.747 kb on - strand at 5847.771 kb on + strand at 5847.772 kb on - strand at 5847.797 kb on + strand at 5847.797 kb on + strand at 5847.797 kb on + strand at 5847.797 kb on + strand at 5847.798 kb on - strand at 5847.798 kb on - strand at 5847.798 kb on - strand at 5847.799 kb on + strand at 5847.799 kb on + strand at 5847.800 kb on - strand at 5847.899 kb on - strand at 5847.899 kb on - strand at 5847.899 kb on - strand at 5848.080 kb on - strand, within PP_5127 at 5848.080 kb on - strand, within PP_5127 at 5848.136 kb on - strand, within PP_5127 at 5848.147 kb on + strand, within PP_5127 at 5848.339 kb on + strand, within PP_5127 at 5848.340 kb on - strand, within PP_5127 at 5848.354 kb on + strand, within PP_5127 at 5848.354 kb on + strand, within PP_5127 at 5848.445 kb on - strand, within PP_5127 at 5848.445 kb on - strand, within PP_5127 at 5848.445 kb on - strand, within PP_5127 at 5848.480 kb on + strand, within PP_5127 at 5848.499 kb on + strand, within PP_5127 at 5848.499 kb on + strand, within PP_5127 at 5848.517 kb on - strand, within PP_5127 at 5849.026 kb on + strand at 5849.026 kb on + strand at 5849.027 kb on - strand at 5849.027 kb on - strand at 5849.027 kb on - strand at 5849.118 kb on + strand at 5849.130 kb on - strand at 5849.158 kb on + strand at 5849.276 kb on + strand at 5849.276 kb on - strand at 5849.277 kb on - strand at 5849.570 kb on - strand, within PP_5128 at 5849.611 kb on + strand, within PP_5128 at 5849.612 kb on - strand, within PP_5128 at 5849.612 kb on - strand, within PP_5128 at 5849.612 kb on - strand, within PP_5128 at 5849.612 kb on - strand, within PP_5128 at 5849.649 kb on + strand, within PP_5128 at 5849.649 kb on + strand, within PP_5128 at 5849.650 kb on - strand, within PP_5128 at 5849.839 kb on + strand, within PP_5128 at 5850.001 kb on - strand, within PP_5128 at 5850.025 kb on + strand, within PP_5128
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 5,846,902 + +0.1 5,846,902 + +0.2 5,846,903 - -2.1 5,846,981 + +0.0 5,846,981 + PP_5126 0.17 +0.8 5,846,981 + PP_5126 0.17 +2.1 5,846,982 - PP_5126 0.17 -3.1 5,847,044 + PP_5126 0.24 -4.0 5,847,045 - PP_5126 0.24 +1.9 5,847,133 + PP_5126 0.34 -2.5 5,847,134 - PP_5126 0.34 -0.6 5,847,134 - PP_5126 0.34 +1.4 5,847,211 + PP_5126 0.43 +1.0 5,847,212 - PP_5126 0.43 +1.7 5,847,212 - PP_5126 0.43 -3.0 5,847,212 - PP_5126 0.43 -1.8 5,847,212 - PP_5126 0.43 +1.8 5,847,212 - PP_5126 0.43 +0.1 5,847,212 - PP_5126 0.43 +1.2 5,847,235 + PP_5126 0.46 +0.8 5,847,236 - PP_5126 0.46 +2.3 5,847,293 + PP_5126 0.52 -1.2 5,847,293 + PP_5126 0.52 +1.7 5,847,293 + PP_5126 0.52 -3.5 5,847,293 + PP_5126 0.52 +1.5 5,847,294 - PP_5126 0.53 +0.6 5,847,295 + PP_5126 0.53 +1.3 5,847,295 + PP_5126 0.53 +0.0 5,847,295 + PP_5126 0.53 +1.4 5,847,296 - PP_5126 0.53 +0.4 5,847,296 - PP_5126 0.53 +1.5 5,847,296 - PP_5126 0.53 +3.9 5,847,316 - PP_5126 0.55 -3.0 5,847,323 + PP_5126 0.56 -1.7 5,847,458 + PP_5126 0.71 +1.0 5,847,459 - PP_5126 0.71 -1.3 5,847,462 + PP_5126 0.72 +1.4 5,847,463 - PP_5126 0.72 +1.9 5,847,463 - PP_5126 0.72 +0.3 5,847,463 - PP_5126 0.72 +0.5 5,847,463 - PP_5126 0.72 -3.9 5,847,463 - PP_5126 0.72 -3.7 5,847,607 + PP_5126 0.88 +0.1 5,847,607 + PP_5126 0.88 +0.9 5,847,608 - PP_5126 0.89 -3.3 5,847,608 - PP_5126 0.89 +0.4 5,847,608 - PP_5126 0.89 +2.3 5,847,608 - PP_5126 0.89 +1.0 5,847,608 - PP_5126 0.89 +1.0 5,847,608 - PP_5126 0.89 +0.9 5,847,707 + -3.0 5,847,707 + +0.0 5,847,707 + +1.4 5,847,707 + -2.9 5,847,708 - +0.7 5,847,708 - -0.6 5,847,708 - -1.4 5,847,708 - -0.4 5,847,708 - +1.4 5,847,739 - +1.8 5,847,746 + +0.4 5,847,747 - -3.5 5,847,771 + +0.3 5,847,772 - -2.1 5,847,797 + +0.5 5,847,797 + +0.9 5,847,797 + +1.7 5,847,797 + +0.9 5,847,798 - -3.1 5,847,798 - -3.1 5,847,798 - -3.2 5,847,799 + +0.6 5,847,799 + -0.7 5,847,800 - -1.4 5,847,899 - +1.3 5,847,899 - -4.0 5,847,899 - -1.4 5,848,080 - PP_5127 0.21 -3.0 5,848,080 - PP_5127 0.21 -0.6 5,848,136 - PP_5127 0.26 -2.8 5,848,147 + PP_5127 0.27 +0.7 5,848,339 + PP_5127 0.43 -2.6 5,848,340 - PP_5127 0.43 +0.1 5,848,354 + PP_5127 0.44 -0.5 5,848,354 + PP_5127 0.44 -1.7 5,848,445 - PP_5127 0.51 +1.7 5,848,445 - PP_5127 0.51 +0.6 5,848,445 - PP_5127 0.51 +0.8 5,848,480 + PP_5127 0.54 -2.5 5,848,499 + PP_5127 0.56 -2.9 5,848,499 + PP_5127 0.56 -3.7 5,848,517 - PP_5127 0.57 -0.2 5,849,026 + -1.2 5,849,026 + -2.0 5,849,027 - -0.1 5,849,027 - +1.4 5,849,027 - +2.6 5,849,118 + +0.4 5,849,130 - -3.2 5,849,158 + -0.5 5,849,276 + -3.5 5,849,276 - -3.7 5,849,277 - -1.3 5,849,570 - PP_5128 0.15 -1.8 5,849,611 + PP_5128 0.17 -3.7 5,849,612 - PP_5128 0.17 -3.1 5,849,612 - PP_5128 0.17 -0.5 5,849,612 - PP_5128 0.17 -3.7 5,849,612 - PP_5128 0.17 -3.2 5,849,649 + PP_5128 0.19 -1.4 5,849,649 + PP_5128 0.19 -4.3 5,849,650 - PP_5128 0.19 -3.6 5,849,839 + PP_5128 0.29 -2.4 5,850,001 - PP_5128 0.38 +0.3 5,850,025 + PP_5128 0.40 -2.7
Or see this region's nucleotide sequence