Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4785 and PP_4786 are separated by 3 nucleotides PP_4786 and PP_4787 are separated by 232 nucleotides PP_4787 and PP_4788 overlap by 8 nucleotides PP_4788 and PP_4789 are separated by 25 nucleotides
PP_4785: PP_4785 - conserved exported protein of unknown function, at 5,448,024 to 5,448,569
_4785
PP_4786: PP_4786 - conserved protein of unknown function, at 5,448,573 to 5,448,899
_4786
PP_4787: PP_4787 - putative protein with nucleoside triphosphate hydrolase domain, at 5,449,132 to 5,450,130
_4787
PP_4788: PP_4788 - Endoribonuclease YbeY, at 5,450,123 to 5,450,596
_4788
PP_4789: PP_4789 - heat shock protein, Co2+ and Mg2+ efflux protein, at 5,450,622 to 5,451,461
_4789
Position (kb) 5449
5450
5451 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5448.234 kb on + strand, within PP_4785 at 5448.234 kb on + strand, within PP_4785 at 5448.235 kb on - strand, within PP_4785 at 5448.235 kb on - strand, within PP_4785 at 5448.237 kb on + strand, within PP_4785 at 5448.237 kb on + strand, within PP_4785 at 5448.238 kb on - strand, within PP_4785 at 5448.238 kb on - strand, within PP_4785 at 5448.238 kb on - strand, within PP_4785 at 5448.238 kb on - strand, within PP_4785 at 5448.238 kb on - strand, within PP_4785 at 5448.238 kb on - strand, within PP_4785 at 5448.240 kb on + strand, within PP_4785 at 5448.240 kb on + strand, within PP_4785 at 5448.241 kb on - strand, within PP_4785 at 5448.382 kb on - strand, within PP_4785 at 5448.382 kb on - strand, within PP_4785 at 5448.513 kb on + strand, within PP_4785 at 5448.514 kb on - strand, within PP_4785 at 5448.679 kb on - strand, within PP_4786 at 5448.818 kb on - strand at 5448.818 kb on - strand, within PP_4786 at 5448.832 kb on + strand, within PP_4786 at 5448.832 kb on + strand, within PP_4786 at 5448.833 kb on - strand, within PP_4786 at 5448.833 kb on - strand, within PP_4786 at 5448.833 kb on - strand, within PP_4786 at 5448.833 kb on - strand, within PP_4786 at 5448.872 kb on + strand at 5448.873 kb on - strand at 5448.874 kb on + strand at 5448.874 kb on + strand at 5448.874 kb on + strand at 5448.911 kb on + strand at 5448.911 kb on + strand at 5448.911 kb on + strand at 5448.922 kb on + strand at 5448.923 kb on - strand at 5448.941 kb on + strand at 5448.941 kb on + strand at 5448.942 kb on - strand at 5448.942 kb on - strand at 5448.942 kb on - strand at 5448.942 kb on - strand at 5448.942 kb on - strand at 5449.038 kb on + strand at 5449.038 kb on + strand at 5449.039 kb on - strand at 5449.039 kb on - strand at 5449.039 kb on - strand at 5449.039 kb on - strand at 5449.039 kb on - strand at 5449.042 kb on + strand at 5449.042 kb on + strand at 5449.042 kb on + strand at 5449.042 kb on + strand at 5449.043 kb on - strand at 5449.043 kb on - strand at 5449.086 kb on + strand at 5449.086 kb on + strand at 5449.145 kb on + strand at 5449.145 kb on + strand at 5449.145 kb on + strand at 5449.145 kb on + strand at 5449.574 kb on + strand, within PP_4787 at 5449.699 kb on + strand, within PP_4787 at 5449.798 kb on + strand, within PP_4787 at 5449.798 kb on + strand, within PP_4787 at 5450.074 kb on + strand at 5450.561 kb on + strand at 5450.597 kb on + strand at 5450.598 kb on - strand at 5451.120 kb on + strand, within PP_4789 at 5451.121 kb on - strand, within PP_4789
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 5,448,234 + PP_4785 0.38 -3.5 5,448,234 + PP_4785 0.38 -4.7 5,448,235 - PP_4785 0.39 -1.7 5,448,235 - PP_4785 0.39 -3.9 5,448,237 + PP_4785 0.39 -3.3 5,448,237 + PP_4785 0.39 -0.6 5,448,238 - PP_4785 0.39 -5.0 5,448,238 - PP_4785 0.39 -5.0 5,448,238 - PP_4785 0.39 -2.7 5,448,238 - PP_4785 0.39 -2.2 5,448,238 - PP_4785 0.39 -3.8 5,448,238 - PP_4785 0.39 -1.1 5,448,240 + PP_4785 0.40 -4.0 5,448,240 + PP_4785 0.40 -3.4 5,448,241 - PP_4785 0.40 -0.8 5,448,382 - PP_4785 0.66 -4.5 5,448,382 - PP_4785 0.66 -5.1 5,448,513 + PP_4785 0.90 -1.9 5,448,514 - PP_4785 0.90 -3.1 5,448,679 - PP_4786 0.32 -0.2 5,448,818 - +4.4 5,448,818 - PP_4786 0.75 +0.6 5,448,832 + PP_4786 0.79 +1.0 5,448,832 + PP_4786 0.79 +1.8 5,448,833 - PP_4786 0.80 +1.3 5,448,833 - PP_4786 0.80 +0.3 5,448,833 - PP_4786 0.80 +1.4 5,448,833 - PP_4786 0.80 +1.0 5,448,872 + -1.7 5,448,873 - +0.8 5,448,874 + +1.8 5,448,874 + +1.3 5,448,874 + +1.0 5,448,911 + +3.3 5,448,911 + +2.3 5,448,911 + +1.0 5,448,922 + -0.2 5,448,923 - +1.1 5,448,941 + -0.4 5,448,941 + +2.8 5,448,942 - -0.4 5,448,942 - +1.0 5,448,942 - +0.4 5,448,942 - -3.7 5,448,942 - -2.1 5,449,038 + +0.2 5,449,038 + -1.0 5,449,039 - +1.3 5,449,039 - +0.4 5,449,039 - -2.8 5,449,039 - -0.5 5,449,039 - -3.8 5,449,042 + +0.5 5,449,042 + +1.3 5,449,042 + -3.0 5,449,042 + -2.7 5,449,043 - +0.2 5,449,043 - -0.8 5,449,086 + -1.6 5,449,086 + +0.4 5,449,145 + +0.9 5,449,145 + +2.4 5,449,145 + +0.4 5,449,145 + -1.6 5,449,574 + PP_4787 0.44 -1.5 5,449,699 + PP_4787 0.57 +0.2 5,449,798 + PP_4787 0.67 -2.0 5,449,798 + PP_4787 0.67 -3.3 5,450,074 + +0.3 5,450,561 + +2.3 5,450,597 + +1.8 5,450,598 - +1.3 5,451,120 + PP_4789 0.59 +0.5 5,451,121 - PP_4789 0.59 +1.2
Or see this region's nucleotide sequence