Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4752 and PP_4753 are separated by 101 nucleotides PP_4753 and PP_4754 are separated by 123 nucleotides PP_4754 and PP_4755 are separated by 129 nucleotides
PP_4752: PP_4752 - putative Xaa-Pro aminopeptidase, at 5,407,430 to 5,408,737
_4752
PP_4753: PP_4753 - putative N-methylproline demethylase, at 5,408,839 to 5,410,875
_4753
PP_4754: PP_4754 - Transcriptional regulator, TetR family, at 5,410,999 to 5,411,646
_4754
PP_4755: PP_4755 - Outer membrane ferrichrome-iron receptor, at 5,411,776 to 5,414,169
_4755
Position (kb) 5408
5409
5410
5411 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5408.328 kb on + strand, within PP_4752 at 5408.328 kb on + strand, within PP_4752 at 5408.329 kb on - strand, within PP_4752 at 5408.329 kb on - strand, within PP_4752 at 5408.443 kb on - strand, within PP_4752 at 5408.443 kb on - strand, within PP_4752 at 5408.443 kb on - strand, within PP_4752 at 5408.479 kb on + strand, within PP_4752 at 5408.479 kb on + strand, within PP_4752 at 5408.536 kb on - strand, within PP_4752 at 5408.611 kb on - strand at 5408.611 kb on - strand at 5408.777 kb on + strand at 5408.782 kb on - strand at 5408.782 kb on - strand at 5408.782 kb on - strand at 5408.782 kb on - strand at 5408.792 kb on + strand at 5408.793 kb on - strand at 5408.793 kb on - strand at 5408.814 kb on + strand at 5408.814 kb on + strand at 5408.815 kb on - strand at 5408.815 kb on - strand at 5408.841 kb on - strand at 5408.870 kb on + strand at 5408.870 kb on + strand at 5408.870 kb on + strand at 5408.870 kb on + strand at 5408.871 kb on - strand at 5408.871 kb on - strand at 5408.871 kb on - strand at 5408.984 kb on + strand at 5408.985 kb on - strand at 5408.985 kb on - strand at 5409.030 kb on - strand at 5409.030 kb on - strand at 5409.104 kb on + strand, within PP_4753 at 5409.164 kb on + strand, within PP_4753 at 5409.165 kb on - strand, within PP_4753 at 5409.165 kb on - strand, within PP_4753 at 5409.165 kb on - strand, within PP_4753 at 5409.174 kb on + strand, within PP_4753 at 5409.174 kb on + strand, within PP_4753 at 5409.174 kb on + strand, within PP_4753 at 5409.197 kb on - strand, within PP_4753 at 5409.209 kb on + strand, within PP_4753 at 5409.209 kb on + strand, within PP_4753 at 5409.210 kb on - strand, within PP_4753 at 5409.210 kb on - strand, within PP_4753 at 5409.339 kb on - strand, within PP_4753 at 5409.740 kb on - strand, within PP_4753 at 5409.791 kb on + strand, within PP_4753 at 5409.809 kb on + strand, within PP_4753 at 5409.810 kb on - strand, within PP_4753 at 5409.827 kb on + strand, within PP_4753 at 5409.827 kb on + strand, within PP_4753 at 5409.827 kb on + strand, within PP_4753 at 5409.828 kb on - strand, within PP_4753 at 5410.368 kb on - strand, within PP_4753 at 5410.427 kb on + strand, within PP_4753 at 5410.646 kb on + strand, within PP_4753 at 5410.647 kb on - strand, within PP_4753 at 5410.721 kb on - strand at 5410.721 kb on - strand at 5410.749 kb on - strand at 5410.758 kb on - strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.914 kb on - strand at 5411.059 kb on - strand at 5411.059 kb on - strand at 5411.069 kb on - strand, within PP_4754 at 5411.248 kb on + strand, within PP_4754 at 5411.249 kb on - strand, within PP_4754 at 5411.249 kb on - strand, within PP_4754 at 5411.457 kb on + strand, within PP_4754 at 5411.476 kb on + strand, within PP_4754 at 5411.494 kb on + strand, within PP_4754 at 5411.495 kb on - strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.561 kb on + strand, within PP_4754 at 5411.562 kb on - strand, within PP_4754 at 5411.562 kb on - strand, within PP_4754 at 5411.562 kb on - strand, within PP_4754 at 5411.645 kb on - strand at 5411.680 kb on + strand at 5411.681 kb on - strand at 5411.784 kb on + strand at 5411.784 kb on + strand at 5411.784 kb on + strand at 5411.784 kb on + strand at 5411.785 kb on - strand at 5411.785 kb on - strand at 5411.785 kb on - strand at 5411.786 kb on + strand at 5411.786 kb on + strand at 5411.786 kb on + strand at 5411.786 kb on + strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.822 kb on + strand at 5411.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 5,408,328 + PP_4752 0.69 -2.7 5,408,328 + PP_4752 0.69 -1.6 5,408,329 - PP_4752 0.69 -4.1 5,408,329 - PP_4752 0.69 -0.3 5,408,443 - PP_4752 0.77 -3.0 5,408,443 - PP_4752 0.77 +2.5 5,408,443 - PP_4752 0.77 -2.8 5,408,479 + PP_4752 0.80 +2.3 5,408,479 + PP_4752 0.80 +1.3 5,408,536 - PP_4752 0.85 -1.7 5,408,611 - +0.0 5,408,611 - +2.0 5,408,777 + -0.8 5,408,782 - +1.0 5,408,782 - -0.2 5,408,782 - +1.1 5,408,782 - -0.7 5,408,792 + -1.3 5,408,793 - -0.5 5,408,793 - +0.6 5,408,814 + -3.3 5,408,814 + -0.3 5,408,815 - -0.9 5,408,815 - -1.4 5,408,841 - +0.8 5,408,870 + +0.6 5,408,870 + -3.4 5,408,870 + +1.2 5,408,870 + +0.4 5,408,871 - -3.4 5,408,871 - +1.9 5,408,871 - +0.7 5,408,984 + -0.2 5,408,985 - +1.2 5,408,985 - -3.8 5,409,030 - +0.7 5,409,030 - +0.5 5,409,104 + PP_4753 0.13 -2.9 5,409,164 + PP_4753 0.16 -2.7 5,409,165 - PP_4753 0.16 +1.3 5,409,165 - PP_4753 0.16 +3.3 5,409,165 - PP_4753 0.16 -3.4 5,409,174 + PP_4753 0.16 -0.7 5,409,174 + PP_4753 0.16 -2.6 5,409,174 + PP_4753 0.16 -2.3 5,409,197 - PP_4753 0.18 -4.3 5,409,209 + PP_4753 0.18 +0.2 5,409,209 + PP_4753 0.18 +0.4 5,409,210 - PP_4753 0.18 -1.9 5,409,210 - PP_4753 0.18 -1.1 5,409,339 - PP_4753 0.25 +1.6 5,409,740 - PP_4753 0.44 -1.2 5,409,791 + PP_4753 0.47 -0.5 5,409,809 + PP_4753 0.48 +0.0 5,409,810 - PP_4753 0.48 -0.2 5,409,827 + PP_4753 0.49 +0.1 5,409,827 + PP_4753 0.49 +1.5 5,409,827 + PP_4753 0.49 -3.0 5,409,828 - PP_4753 0.49 -2.9 5,410,368 - PP_4753 0.75 -0.4 5,410,427 + PP_4753 0.78 -2.9 5,410,646 + PP_4753 0.89 +0.9 5,410,647 - PP_4753 0.89 -2.1 5,410,721 - +0.2 5,410,721 - +0.1 5,410,749 - -2.4 5,410,758 - +0.8 5,410,913 + -0.1 5,410,913 + +1.0 5,410,913 + +0.3 5,410,913 + +1.3 5,410,913 + +1.1 5,410,914 - +0.8 5,411,059 - +1.0 5,411,059 - +1.4 5,411,069 - PP_4754 0.11 -2.7 5,411,248 + PP_4754 0.38 +0.4 5,411,249 - PP_4754 0.39 -4.7 5,411,249 - PP_4754 0.39 -3.2 5,411,457 + PP_4754 0.71 +1.0 5,411,476 + PP_4754 0.74 +0.7 5,411,494 + PP_4754 0.76 +1.0 5,411,495 - PP_4754 0.77 +1.0 5,411,539 + PP_4754 0.83 -2.2 5,411,539 + PP_4754 0.83 +1.7 5,411,539 + PP_4754 0.83 +2.2 5,411,539 + PP_4754 0.83 -2.2 5,411,539 + PP_4754 0.83 +1.7 5,411,540 - PP_4754 0.83 -2.2 5,411,540 - PP_4754 0.83 -0.5 5,411,540 - PP_4754 0.83 -0.7 5,411,540 - PP_4754 0.83 -2.1 5,411,561 + PP_4754 0.87 -3.5 5,411,562 - PP_4754 0.87 +0.2 5,411,562 - PP_4754 0.87 +0.1 5,411,562 - PP_4754 0.87 +0.1 5,411,645 - +0.4 5,411,680 + -3.6 5,411,681 - +0.7 5,411,784 + -1.1 5,411,784 + -2.6 5,411,784 + -3.7 5,411,784 + -3.5 5,411,785 - +0.1 5,411,785 - +0.8 5,411,785 - +0.5 5,411,786 + +1.2 5,411,786 + -2.4 5,411,786 + -1.7 5,411,786 + -0.3 5,411,787 - -4.1 5,411,787 - +0.8 5,411,787 - +1.5 5,411,787 - -3.4 5,411,787 - -4.0 5,411,822 + -0.4 5,411,826 - -0.5
Or see this region's nucleotide sequence