Strain Fitness in Pseudomonas putida KT2440 around PP_4467

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4466 and PP_4467 are separated by 245 nucleotidesPP_4467 and PP_5689 are separated by 246 nucleotides PP_4466: PP_4466 - Dioxygenase, TauD/TfdA family, at 5,070,014 to 5,070,886 _4466 PP_4467: PP_4467 - Transcriptional regulator, LysR family, at 5,071,132 to 5,072,034 _4467 PP_5689: PP_5689 - conserved protein of unknown function, at 5,072,281 to 5,072,850 _5689 Position (kb) 5071 5072 5073Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5070.185 kb on + strand, within PP_4466at 5070.197 kb on - strand, within PP_4466at 5070.209 kb on - strand, within PP_4466at 5070.209 kb on - strand, within PP_4466at 5070.218 kb on + strand, within PP_4466at 5070.219 kb on - strand, within PP_4466at 5070.242 kb on + strand, within PP_4466at 5070.243 kb on - strand, within PP_4466at 5070.243 kb on - strand, within PP_4466at 5070.243 kb on - strand, within PP_4466at 5070.243 kb on - strand, within PP_4466at 5070.243 kb on - strand, within PP_4466at 5070.262 kb on - strand, within PP_4466at 5070.291 kb on - strand, within PP_4466at 5070.291 kb on - strand, within PP_4466at 5070.343 kb on + strand, within PP_4466at 5070.344 kb on - strand, within PP_4466at 5070.344 kb on - strand, within PP_4466at 5070.384 kb on + strand, within PP_4466at 5070.385 kb on - strand, within PP_4466at 5070.385 kb on - strand, within PP_4466at 5070.429 kb on - strand, within PP_4466at 5070.433 kb on - strand, within PP_4466at 5070.433 kb on - strand, within PP_4466at 5070.433 kb on - strand, within PP_4466at 5070.450 kb on + strand, within PP_4466at 5070.459 kb on + strand, within PP_4466at 5070.459 kb on + strand, within PP_4466at 5070.460 kb on - strand, within PP_4466at 5070.474 kb on + strand, within PP_4466at 5070.474 kb on + strand, within PP_4466at 5070.474 kb on + strand, within PP_4466at 5070.475 kb on - strand, within PP_4466at 5070.475 kb on - strand, within PP_4466at 5070.540 kb on + strand, within PP_4466at 5070.541 kb on - strand, within PP_4466at 5070.607 kb on + strand, within PP_4466at 5070.607 kb on + strand, within PP_4466at 5070.607 kb on + strand, within PP_4466at 5070.610 kb on + strand, within PP_4466at 5070.610 kb on + strand, within PP_4466at 5070.610 kb on + strand, within PP_4466at 5070.611 kb on - strand, within PP_4466at 5070.616 kb on + strand, within PP_4466at 5070.616 kb on + strand, within PP_4466at 5070.617 kb on - strand, within PP_4466at 5070.622 kb on + strand, within PP_4466at 5070.679 kb on + strand, within PP_4466at 5070.679 kb on + strand, within PP_4466at 5070.680 kb on - strand, within PP_4466at 5070.680 kb on - strand, within PP_4466at 5070.680 kb on - strand, within PP_4466at 5070.727 kb on + strand, within PP_4466at 5070.733 kb on - strand, within PP_4466at 5070.750 kb on - strand, within PP_4466at 5070.759 kb on + strand, within PP_4466at 5070.780 kb on - strand, within PP_4466at 5070.804 kb on + strandat 5070.805 kb on - strandat 5070.825 kb on - strandat 5070.825 kb on - strandat 5070.926 kb on + strandat 5070.927 kb on - strandat 5070.931 kb on + strandat 5070.931 kb on + strandat 5070.931 kb on + strandat 5070.932 kb on - strandat 5070.932 kb on - strandat 5070.932 kb on - strandat 5070.932 kb on - strandat 5070.975 kb on + strandat 5070.975 kb on + strandat 5071.029 kb on - strandat 5071.052 kb on - strandat 5071.062 kb on + strandat 5071.116 kb on + strandat 5071.116 kb on + strandat 5071.117 kb on - strandat 5071.139 kb on + strandat 5071.139 kb on + strandat 5071.160 kb on + strandat 5071.271 kb on + strand, within PP_4467at 5071.335 kb on + strand, within PP_4467at 5071.335 kb on + strand, within PP_4467at 5071.335 kb on + strand, within PP_4467at 5071.335 kb on + strand, within PP_4467at 5071.335 kb on + strand, within PP_4467at 5071.335 kb on + strand, within PP_4467at 5071.336 kb on - strand, within PP_4467at 5071.336 kb on - strand, within PP_4467at 5071.393 kb on - strand, within PP_4467at 5071.393 kb on - strand, within PP_4467at 5071.393 kb on - strand, within PP_4467at 5071.393 kb on - strand, within PP_4467at 5071.393 kb on - strand, within PP_4467at 5071.414 kb on - strand, within PP_4467at 5071.414 kb on - strand, within PP_4467at 5071.419 kb on + strand, within PP_4467at 5071.500 kb on + strand, within PP_4467at 5071.501 kb on - strand, within PP_4467at 5071.521 kb on - strand, within PP_4467at 5071.521 kb on - strand, within PP_4467at 5071.521 kb on - strand, within PP_4467at 5071.524 kb on + strand, within PP_4467at 5071.524 kb on + strand, within PP_4467at 5071.935 kb on - strand, within PP_4467at 5071.981 kb on - strandat 5072.039 kb on - strandat 5072.189 kb on + strandat 5072.203 kb on + strandat 5072.224 kb on + strandat 5072.225 kb on - strandat 5072.391 kb on + strand, within PP_5689at 5072.422 kb on - strand, within PP_5689at 5072.433 kb on - strand, within PP_5689at 5072.480 kb on - strand, within PP_5689at 5072.530 kb on - strand, within PP_5689at 5072.569 kb on + strand, within PP_5689at 5072.697 kb on + strand, within PP_5689at 5072.698 kb on - strand, within PP_5689at 5072.700 kb on - strand, within PP_5689at 5072.700 kb on - strand, within PP_5689at 5072.818 kb on - strandat 5072.851 kb on - strandat 5072.879 kb on + strandat 5072.940 kb on + strandat 5072.943 kb on - strandat 5073.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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5,070,185 + PP_4466 0.20 +0.9
5,070,197 - PP_4466 0.21 -0.3
5,070,209 - PP_4466 0.22 -2.6
5,070,209 - PP_4466 0.22 -3.5
5,070,218 + PP_4466 0.23 +0.4
5,070,219 - PP_4466 0.23 -0.1
5,070,242 + PP_4466 0.26 -0.4
5,070,243 - PP_4466 0.26 +0.8
5,070,243 - PP_4466 0.26 -3.4
5,070,243 - PP_4466 0.26 +2.2
5,070,243 - PP_4466 0.26 +1.5
5,070,243 - PP_4466 0.26 +0.6
5,070,262 - PP_4466 0.28 +2.3
5,070,291 - PP_4466 0.32 -0.0
5,070,291 - PP_4466 0.32 +1.8
5,070,343 + PP_4466 0.38 +2.1
5,070,344 - PP_4466 0.38 -3.3
5,070,344 - PP_4466 0.38 +0.2
5,070,384 + PP_4466 0.42 -3.3
5,070,385 - PP_4466 0.42 +3.0
5,070,385 - PP_4466 0.42 -2.6
5,070,429 - PP_4466 0.48 +2.1
5,070,433 - PP_4466 0.48 -0.3
5,070,433 - PP_4466 0.48 -0.4
5,070,433 - PP_4466 0.48 -3.1
5,070,450 + PP_4466 0.50 +0.5
5,070,459 + PP_4466 0.51 -3.3
5,070,459 + PP_4466 0.51 -2.9
5,070,460 - PP_4466 0.51 -1.0
5,070,474 + PP_4466 0.53 -2.0
5,070,474 + PP_4466 0.53 -3.0
5,070,474 + PP_4466 0.53 -0.5
5,070,475 - PP_4466 0.53 -3.2
5,070,475 - PP_4466 0.53 -4.4
5,070,540 + PP_4466 0.60 +1.3
5,070,541 - PP_4466 0.60 -2.5
5,070,607 + PP_4466 0.68 +2.3
5,070,607 + PP_4466 0.68 +1.7
5,070,607 + PP_4466 0.68 -3.4
5,070,610 + PP_4466 0.68 -3.5
5,070,610 + PP_4466 0.68 +2.5
5,070,610 + PP_4466 0.68 -0.9
5,070,611 - PP_4466 0.68 +0.6
5,070,616 + PP_4466 0.69 +1.9
5,070,616 + PP_4466 0.69 +3.4
5,070,617 - PP_4466 0.69 +1.9
5,070,622 + PP_4466 0.70 -2.7
5,070,679 + PP_4466 0.76 -3.0
5,070,679 + PP_4466 0.76 -0.8
5,070,680 - PP_4466 0.76 +1.1
5,070,680 - PP_4466 0.76 -1.6
5,070,680 - PP_4466 0.76 +1.8
5,070,727 + PP_4466 0.82 -0.8
5,070,733 - PP_4466 0.82 -0.4
5,070,750 - PP_4466 0.84 -1.2
5,070,759 + PP_4466 0.85 +0.5
5,070,780 - PP_4466 0.88 +0.9
5,070,804 + -3.6
5,070,805 - -0.2
5,070,825 - -3.4
5,070,825 - -3.1
5,070,926 + -1.3
5,070,927 - +0.4
5,070,931 + +1.2
5,070,931 + +2.1
5,070,931 + +1.0
5,070,932 - +2.2
5,070,932 - +1.8
5,070,932 - -3.6
5,070,932 - +1.2
5,070,975 + -3.0
5,070,975 + +0.9
5,071,029 - +1.5
5,071,052 - -0.6
5,071,062 + +2.5
5,071,116 + -3.5
5,071,116 + -3.8
5,071,117 - +0.6
5,071,139 + +2.0
5,071,139 + -2.6
5,071,160 + +1.6
5,071,271 + PP_4467 0.15 +0.4
5,071,335 + PP_4467 0.22 +1.2
5,071,335 + PP_4467 0.22 +2.6
5,071,335 + PP_4467 0.22 -3.5
5,071,335 + PP_4467 0.22 -3.9
5,071,335 + PP_4467 0.22 -2.2
5,071,335 + PP_4467 0.22 +0.6
5,071,336 - PP_4467 0.23 +0.3
5,071,336 - PP_4467 0.23 -3.2
5,071,393 - PP_4467 0.29 -2.0
5,071,393 - PP_4467 0.29 -2.8
5,071,393 - PP_4467 0.29 -0.1
5,071,393 - PP_4467 0.29 +0.3
5,071,393 - PP_4467 0.29 -2.7
5,071,414 - PP_4467 0.31 -1.5
5,071,414 - PP_4467 0.31 -0.5
5,071,419 + PP_4467 0.32 -3.6
5,071,500 + PP_4467 0.41 -1.8
5,071,501 - PP_4467 0.41 -0.8
5,071,521 - PP_4467 0.43 -2.9
5,071,521 - PP_4467 0.43 -0.5
5,071,521 - PP_4467 0.43 +1.7
5,071,524 + PP_4467 0.43 -3.5
5,071,524 + PP_4467 0.43 -2.3
5,071,935 - PP_4467 0.89 -2.7
5,071,981 - -0.3
5,072,039 - +0.4
5,072,189 + -2.5
5,072,203 + +2.6
5,072,224 + -2.9
5,072,225 - -1.2
5,072,391 + PP_5689 0.19 +2.1
5,072,422 - PP_5689 0.25 -1.8
5,072,433 - PP_5689 0.27 +1.3
5,072,480 - PP_5689 0.35 -1.9
5,072,530 - PP_5689 0.44 +0.0
5,072,569 + PP_5689 0.51 +0.9
5,072,697 + PP_5689 0.73 -0.8
5,072,698 - PP_5689 0.73 -3.6
5,072,700 - PP_5689 0.74 -0.6
5,072,700 - PP_5689 0.74 +1.5
5,072,818 - -0.2
5,072,851 - +1.7
5,072,879 + -2.3
5,072,940 + +2.0
5,072,943 - +0.1
5,073,003 - +1.3

Or see this region's nucleotide sequence