Strain Fitness in Pseudomonas putida KT2440 around PP_4178

Experiment: Growth at pH6 and (C) D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4177 and PP_4178 are separated by 94 nucleotidesPP_4178 and PP_4179 are separated by 63 nucleotides PP_4177: PP_4177 - conserved protein of unknown function, at 4,719,894 to 4,720,775 _4177 PP_4178: PP_4178 - Dienelactone hydrolase family protein, at 4,720,870 to 4,721,595 _4178 PP_4179: PP_4179 - Chaperone protein HtpG, at 4,721,659 to 4,723,563 _4179 Position (kb) 4720 4721 4722Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4720.045 kb on - strand, within PP_4177at 4720.045 kb on - strand, within PP_4177at 4720.045 kb on - strand, within PP_4177at 4720.108 kb on - strand, within PP_4177at 4720.270 kb on + strand, within PP_4177at 4720.270 kb on + strand, within PP_4177at 4720.314 kb on + strand, within PP_4177at 4720.314 kb on + strand, within PP_4177at 4720.315 kb on - strand, within PP_4177at 4720.367 kb on + strand, within PP_4177at 4720.367 kb on + strand, within PP_4177at 4720.368 kb on - strand, within PP_4177at 4720.368 kb on - strand, within PP_4177at 4720.368 kb on - strand, within PP_4177at 4720.368 kb on - strand, within PP_4177at 4720.434 kb on + strand, within PP_4177at 4720.435 kb on - strand, within PP_4177at 4720.435 kb on - strand, within PP_4177at 4720.435 kb on - strand, within PP_4177at 4720.503 kb on + strand, within PP_4177at 4720.503 kb on + strand, within PP_4177at 4720.504 kb on - strand, within PP_4177at 4720.504 kb on - strand, within PP_4177at 4720.508 kb on - strand, within PP_4177at 4720.593 kb on + strand, within PP_4177at 4720.593 kb on + strand, within PP_4177at 4720.593 kb on + strand, within PP_4177at 4720.593 kb on + strand, within PP_4177at 4720.593 kb on + strand, within PP_4177at 4720.594 kb on - strand, within PP_4177at 4720.594 kb on - strand, within PP_4177at 4720.765 kb on + strandat 4720.899 kb on + strandat 4720.940 kb on + strandat 4720.959 kb on + strand, within PP_4178at 4720.960 kb on - strand, within PP_4178at 4721.396 kb on + strand, within PP_4178at 4721.396 kb on + strand, within PP_4178at 4721.396 kb on + strand, within PP_4178at 4721.397 kb on - strand, within PP_4178at 4721.420 kb on + strand, within PP_4178at 4721.525 kb on + strandat 4721.525 kb on + strandat 4721.526 kb on - strandat 4721.543 kb on + strandat 4721.543 kb on + strandat 4721.543 kb on + strandat 4721.584 kb on + strandat 4721.680 kb on + strandat 4721.681 kb on - strandat 4721.681 kb on - strandat 4721.703 kb on - strandat 4721.703 kb on - strandat 4722.134 kb on + strand, within PP_4179at 4722.251 kb on + strand, within PP_4179at 4722.251 kb on + strand, within PP_4179at 4722.251 kb on + strand, within PP_4179at 4722.252 kb on - strand, within PP_4179at 4722.254 kb on + strand, within PP_4179at 4722.254 kb on + strand, within PP_4179at 4722.254 kb on + strand, within PP_4179at 4722.255 kb on - strand, within PP_4179at 4722.255 kb on - strand, within PP_4179at 4722.255 kb on - strand, within PP_4179at 4722.255 kb on - strand, within PP_4179at 4722.255 kb on - strand, within PP_4179at 4722.255 kb on - strand, within PP_4179at 4722.255 kb on - strand, within PP_4179at 4722.290 kb on + strand, within PP_4179at 4722.290 kb on + strand, within PP_4179

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
remove
4,720,045 - PP_4177 0.17 -1.5
4,720,045 - PP_4177 0.17 +1.5
4,720,045 - PP_4177 0.17 +2.6
4,720,108 - PP_4177 0.24 +0.4
4,720,270 + PP_4177 0.43 -3.4
4,720,270 + PP_4177 0.43 +1.3
4,720,314 + PP_4177 0.48 +1.1
4,720,314 + PP_4177 0.48 +0.6
4,720,315 - PP_4177 0.48 -1.7
4,720,367 + PP_4177 0.54 -3.2
4,720,367 + PP_4177 0.54 -0.0
4,720,368 - PP_4177 0.54 +1.3
4,720,368 - PP_4177 0.54 +1.9
4,720,368 - PP_4177 0.54 -1.9
4,720,368 - PP_4177 0.54 -4.2
4,720,434 + PP_4177 0.61 -2.0
4,720,435 - PP_4177 0.61 -3.2
4,720,435 - PP_4177 0.61 +1.0
4,720,435 - PP_4177 0.61 +0.7
4,720,503 + PP_4177 0.69 -3.5
4,720,503 + PP_4177 0.69 -0.2
4,720,504 - PP_4177 0.69 -0.8
4,720,504 - PP_4177 0.69 +0.6
4,720,508 - PP_4177 0.70 +0.3
4,720,593 + PP_4177 0.79 -3.0
4,720,593 + PP_4177 0.79 +0.7
4,720,593 + PP_4177 0.79 +0.6
4,720,593 + PP_4177 0.79 +0.9
4,720,593 + PP_4177 0.79 +0.2
4,720,594 - PP_4177 0.79 +0.1
4,720,594 - PP_4177 0.79 +1.0
4,720,765 + -3.7
4,720,899 + -2.9
4,720,940 + +1.5
4,720,959 + PP_4178 0.12 -1.2
4,720,960 - PP_4178 0.12 +1.3
4,721,396 + PP_4178 0.72 -4.1
4,721,396 + PP_4178 0.72 -3.3
4,721,396 + PP_4178 0.72 -3.2
4,721,397 - PP_4178 0.73 -3.8
4,721,420 + PP_4178 0.76 -4.2
4,721,525 + -1.0
4,721,525 + -4.2
4,721,526 - -3.6
4,721,543 + +0.3
4,721,543 + -0.0
4,721,543 + -0.4
4,721,584 + -2.9
4,721,680 + -2.0
4,721,681 - -1.2
4,721,681 - +2.3
4,721,703 - -0.9
4,721,703 - -2.6
4,722,134 + PP_4179 0.25 +2.2
4,722,251 + PP_4179 0.31 -1.9
4,722,251 + PP_4179 0.31 -2.7
4,722,251 + PP_4179 0.31 +0.0
4,722,252 - PP_4179 0.31 -1.5
4,722,254 + PP_4179 0.31 -2.5
4,722,254 + PP_4179 0.31 -0.3
4,722,254 + PP_4179 0.31 +0.5
4,722,255 - PP_4179 0.31 +1.4
4,722,255 - PP_4179 0.31 +2.4
4,722,255 - PP_4179 0.31 +1.4
4,722,255 - PP_4179 0.31 -0.4
4,722,255 - PP_4179 0.31 -0.7
4,722,255 - PP_4179 0.31 -1.0
4,722,255 - PP_4179 0.31 -2.8
4,722,290 + PP_4179 0.33 -1.5
4,722,290 + PP_4179 0.33 +0.2

Or see this region's nucleotide sequence