Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3935 and PP_3938 are separated by 538 nucleotides PP_3938 and PP_3939 are separated by 171 nucleotides PP_3939 and PP_3940 are separated by 137 nucleotides
PP_3935: PP_3935 - conserved protein of unknown function, at 4,440,133 to 4,440,342
_3935
PP_3938: PP_3938 - conserved protein of unknown function, at 4,440,881 to 4,441,066
_3938
PP_3939: PP_3939 - porin-like protein, at 4,441,238 to 4,442,530
_3939
PP_3940: PP_3940 - Putative metabolite transport protein NicT, at 4,442,668 to 4,443,981
_3940
Position (kb) 4441
4442
4443 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4440.289 kb on - strand, within PP_3935 at 4440.289 kb on - strand, within PP_3935 at 4440.289 kb on - strand, within PP_3935 at 4440.289 kb on - strand, within PP_3935 at 4440.372 kb on - strand at 4440.438 kb on + strand at 4440.439 kb on - strand at 4440.464 kb on - strand at 4440.464 kb on - strand at 4440.464 kb on - strand at 4440.606 kb on + strand at 4440.606 kb on + strand at 4440.606 kb on + strand at 4440.606 kb on + strand at 4440.607 kb on - strand at 4440.692 kb on + strand at 4440.697 kb on + strand at 4440.697 kb on + strand at 4440.698 kb on - strand at 4440.741 kb on + strand at 4440.741 kb on + strand at 4440.742 kb on - strand at 4440.748 kb on - strand at 4440.763 kb on + strand at 4440.785 kb on + strand at 4440.786 kb on - strand at 4440.794 kb on + strand at 4440.794 kb on + strand at 4440.830 kb on + strand at 4440.830 kb on + strand at 4440.830 kb on + strand at 4440.864 kb on + strand at 4440.864 kb on + strand at 4440.864 kb on + strand at 4440.864 kb on + strand at 4440.865 kb on - strand at 4440.928 kb on + strand, within PP_3938 at 4440.955 kb on - strand, within PP_3938 at 4441.175 kb on + strand at 4441.175 kb on + strand at 4441.176 kb on - strand at 4441.176 kb on - strand at 4441.193 kb on + strand at 4441.193 kb on + strand at 4441.193 kb on + strand at 4441.193 kb on + strand at 4441.193 kb on + strand at 4441.193 kb on + strand at 4441.193 kb on + strand at 4441.193 kb on + strand at 4441.193 kb on + strand at 4441.194 kb on - strand at 4441.194 kb on - strand at 4441.231 kb on + strand at 4441.231 kb on + strand at 4441.232 kb on - strand at 4441.232 kb on - strand at 4441.232 kb on - strand at 4441.258 kb on - strand at 4441.283 kb on + strand at 4441.283 kb on + strand at 4441.283 kb on + strand at 4441.283 kb on + strand at 4441.283 kb on + strand at 4441.283 kb on + strand at 4441.283 kb on + strand at 4441.283 kb on + strand at 4441.283 kb on + strand at 4441.283 kb on + strand at 4441.283 kb on + strand at 4441.284 kb on - strand at 4441.284 kb on - strand at 4441.284 kb on - strand at 4441.284 kb on - strand at 4441.284 kb on - strand at 4441.284 kb on - strand at 4441.284 kb on - strand at 4441.284 kb on - strand at 4441.284 kb on - strand at 4441.284 kb on - strand at 4441.285 kb on + strand at 4441.286 kb on - strand at 4441.286 kb on - strand at 4441.365 kb on + strand at 4441.365 kb on + strand at 4441.366 kb on - strand at 4441.440 kb on + strand, within PP_3939 at 4441.441 kb on - strand, within PP_3939 at 4441.441 kb on - strand, within PP_3939 at 4441.489 kb on - strand, within PP_3939 at 4441.489 kb on - strand, within PP_3939 at 4441.549 kb on + strand, within PP_3939 at 4441.549 kb on + strand, within PP_3939 at 4441.549 kb on + strand, within PP_3939 at 4441.549 kb on + strand, within PP_3939 at 4441.549 kb on + strand, within PP_3939 at 4441.550 kb on - strand, within PP_3939 at 4441.552 kb on + strand, within PP_3939 at 4441.578 kb on - strand, within PP_3939 at 4441.624 kb on - strand, within PP_3939 at 4441.624 kb on - strand, within PP_3939 at 4441.630 kb on + strand, within PP_3939 at 4441.723 kb on - strand, within PP_3939 at 4441.777 kb on + strand, within PP_3939 at 4441.777 kb on + strand, within PP_3939 at 4441.779 kb on + strand, within PP_3939 at 4441.779 kb on + strand, within PP_3939 at 4441.780 kb on - strand, within PP_3939 at 4441.780 kb on - strand, within PP_3939 at 4441.794 kb on + strand, within PP_3939 at 4441.794 kb on + strand, within PP_3939 at 4441.795 kb on - strand, within PP_3939 at 4441.798 kb on + strand, within PP_3939 at 4441.798 kb on + strand, within PP_3939 at 4441.798 kb on + strand, within PP_3939 at 4441.799 kb on - strand, within PP_3939 at 4441.835 kb on - strand, within PP_3939 at 4441.854 kb on + strand, within PP_3939 at 4441.855 kb on - strand, within PP_3939 at 4441.855 kb on - strand, within PP_3939 at 4441.869 kb on + strand, within PP_3939 at 4441.869 kb on + strand, within PP_3939 at 4441.870 kb on - strand, within PP_3939 at 4441.870 kb on - strand, within PP_3939 at 4441.870 kb on - strand, within PP_3939 at 4441.888 kb on + strand, within PP_3939 at 4441.935 kb on + strand, within PP_3939 at 4441.935 kb on + strand, within PP_3939 at 4441.936 kb on - strand, within PP_3939 at 4441.936 kb on - strand, within PP_3939 at 4442.040 kb on + strand, within PP_3939 at 4442.040 kb on + strand, within PP_3939 at 4442.040 kb on + strand, within PP_3939 at 4442.287 kb on + strand, within PP_3939 at 4442.288 kb on - strand, within PP_3939 at 4442.311 kb on + strand, within PP_3939 at 4442.389 kb on - strand, within PP_3939 at 4442.389 kb on - strand, within PP_3939 at 4442.473 kb on + strand at 4442.474 kb on - strand at 4442.474 kb on - strand at 4442.530 kb on + strand at 4442.530 kb on + strand at 4442.536 kb on + strand at 4442.536 kb on + strand at 4443.176 kb on + strand, within PP_3940 at 4443.225 kb on + strand, within PP_3940 at 4443.226 kb on - strand, within PP_3940 at 4443.351 kb on + strand, within PP_3940 at 4443.352 kb on - strand, within PP_3940
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 4,440,289 - PP_3935 0.74 -2.7 4,440,289 - PP_3935 0.74 -0.7 4,440,289 - PP_3935 0.74 +1.4 4,440,289 - PP_3935 0.74 +1.2 4,440,372 - -3.7 4,440,438 + -0.2 4,440,439 - +1.6 4,440,464 - -0.5 4,440,464 - +0.6 4,440,464 - -3.1 4,440,606 + +0.5 4,440,606 + +0.5 4,440,606 + -3.0 4,440,606 + -3.5 4,440,607 - -0.8 4,440,692 + +0.7 4,440,697 + +0.4 4,440,697 + -2.4 4,440,698 - -1.0 4,440,741 + -3.7 4,440,741 + -3.9 4,440,742 - +0.3 4,440,748 - -0.6 4,440,763 + +1.2 4,440,785 + +2.1 4,440,786 - +0.3 4,440,794 + -0.8 4,440,794 + -1.0 4,440,830 + +2.2 4,440,830 + -0.0 4,440,830 + -1.8 4,440,864 + -3.7 4,440,864 + -1.8 4,440,864 + -0.8 4,440,864 + +1.4 4,440,865 - +1.5 4,440,928 + PP_3938 0.25 +0.4 4,440,955 - PP_3938 0.40 +2.2 4,441,175 + +1.1 4,441,175 + +0.7 4,441,176 - -4.3 4,441,176 - +0.3 4,441,193 + -3.3 4,441,193 + +0.9 4,441,193 + -3.6 4,441,193 + -1.9 4,441,193 + +2.0 4,441,193 + -3.4 4,441,193 + +1.5 4,441,193 + +1.4 4,441,193 + +0.7 4,441,194 - -2.2 4,441,194 - -3.3 4,441,231 + -0.8 4,441,231 + +0.2 4,441,232 - -3.3 4,441,232 - -4.2 4,441,232 - -0.8 4,441,258 - -3.7 4,441,283 + -3.0 4,441,283 + -3.6 4,441,283 + +0.0 4,441,283 + -1.5 4,441,283 + -2.6 4,441,283 + -0.0 4,441,283 + +0.6 4,441,283 + -2.7 4,441,283 + +2.1 4,441,283 + -3.2 4,441,283 + +0.6 4,441,284 - +0.6 4,441,284 - +1.3 4,441,284 - +1.3 4,441,284 - -0.5 4,441,284 - -1.2 4,441,284 - +2.2 4,441,284 - -1.9 4,441,284 - -4.0 4,441,284 - -2.4 4,441,284 - +0.1 4,441,285 + -0.9 4,441,286 - -0.6 4,441,286 - -1.9 4,441,365 + -1.1 4,441,365 + +1.2 4,441,366 - -0.8 4,441,440 + PP_3939 0.16 -2.9 4,441,441 - PP_3939 0.16 +2.1 4,441,441 - PP_3939 0.16 +1.6 4,441,489 - PP_3939 0.19 -2.3 4,441,489 - PP_3939 0.19 -4.2 4,441,549 + PP_3939 0.24 +1.0 4,441,549 + PP_3939 0.24 +1.1 4,441,549 + PP_3939 0.24 +1.6 4,441,549 + PP_3939 0.24 +0.8 4,441,549 + PP_3939 0.24 +1.1 4,441,550 - PP_3939 0.24 +1.1 4,441,552 + PP_3939 0.24 -2.4 4,441,578 - PP_3939 0.26 -2.9 4,441,624 - PP_3939 0.30 +1.4 4,441,624 - PP_3939 0.30 +1.2 4,441,630 + PP_3939 0.30 -3.3 4,441,723 - PP_3939 0.38 +0.2 4,441,777 + PP_3939 0.42 -4.4 4,441,777 + PP_3939 0.42 +0.0 4,441,779 + PP_3939 0.42 -0.6 4,441,779 + PP_3939 0.42 +0.2 4,441,780 - PP_3939 0.42 -2.6 4,441,780 - PP_3939 0.42 -3.1 4,441,794 + PP_3939 0.43 +0.3 4,441,794 + PP_3939 0.43 +0.9 4,441,795 - PP_3939 0.43 -4.2 4,441,798 + PP_3939 0.43 +2.1 4,441,798 + PP_3939 0.43 -1.4 4,441,798 + PP_3939 0.43 -0.9 4,441,799 - PP_3939 0.43 +2.3 4,441,835 - PP_3939 0.46 +1.2 4,441,854 + PP_3939 0.48 -4.2 4,441,855 - PP_3939 0.48 +1.8 4,441,855 - PP_3939 0.48 -1.3 4,441,869 + PP_3939 0.49 -3.2 4,441,869 + PP_3939 0.49 -0.5 4,441,870 - PP_3939 0.49 +1.6 4,441,870 - PP_3939 0.49 +0.2 4,441,870 - PP_3939 0.49 -3.1 4,441,888 + PP_3939 0.50 +0.7 4,441,935 + PP_3939 0.54 +1.0 4,441,935 + PP_3939 0.54 +1.8 4,441,936 - PP_3939 0.54 -3.1 4,441,936 - PP_3939 0.54 +0.4 4,442,040 + PP_3939 0.62 +1.4 4,442,040 + PP_3939 0.62 +0.8 4,442,040 + PP_3939 0.62 +0.2 4,442,287 + PP_3939 0.81 -0.1 4,442,288 - PP_3939 0.81 +2.5 4,442,311 + PP_3939 0.83 -3.0 4,442,389 - PP_3939 0.89 +1.7 4,442,389 - PP_3939 0.89 -2.1 4,442,473 + -3.5 4,442,474 - -4.3 4,442,474 - +1.5 4,442,530 + +2.2 4,442,530 + -1.5 4,442,536 + +0.7 4,442,536 + +0.3 4,443,176 + PP_3940 0.39 -2.5 4,443,225 + PP_3940 0.42 +1.0 4,443,226 - PP_3940 0.42 +1.7 4,443,351 + PP_3940 0.52 +0.4 4,443,352 - PP_3940 0.52 -1.6
Or see this region's nucleotide sequence