Experiment: Growth at pH6 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3563 and PP_3564 are separated by 1 nucleotides PP_3564 and PP_3565 are separated by 104 nucleotides PP_3565 and PP_3566 are separated by 48 nucleotides
PP_3563: PP_3563 - conserved exported protein of unknown function, at 4,041,913 to 4,042,764
_3563
PP_3564: PP_3564 - Transcriptional regulator, AraC family, at 4,042,766 to 4,043,743
_3564
PP_3565: PP_3565 - Transporter, LysE family, at 4,043,848 to 4,044,459
_3565
PP_3566: PP_3566 - Major facilitator family transporter, at 4,044,508 to 4,045,707
_3566
Position (kb) 4042
4043
4044 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4041.864 kb on + strand at 4041.865 kb on - strand at 4041.865 kb on - strand at 4041.865 kb on - strand at 4041.900 kb on + strand at 4042.150 kb on + strand, within PP_3563 at 4042.264 kb on + strand, within PP_3563 at 4042.571 kb on - strand, within PP_3563 at 4042.700 kb on - strand at 4042.706 kb on + strand at 4042.707 kb on - strand at 4042.732 kb on + strand at 4042.733 kb on - strand at 4042.762 kb on + strand at 4042.762 kb on + strand at 4042.763 kb on - strand at 4042.807 kb on + strand at 4042.842 kb on + strand at 4042.842 kb on + strand at 4042.842 kb on + strand at 4042.842 kb on + strand at 4042.843 kb on - strand at 4043.207 kb on + strand, within PP_3564 at 4043.208 kb on - strand, within PP_3564 at 4043.208 kb on - strand, within PP_3564 at 4043.225 kb on + strand, within PP_3564 at 4043.226 kb on - strand, within PP_3564 at 4043.274 kb on + strand, within PP_3564 at 4043.274 kb on + strand, within PP_3564 at 4043.275 kb on - strand, within PP_3564 at 4043.519 kb on + strand, within PP_3564 at 4043.520 kb on - strand, within PP_3564 at 4043.637 kb on + strand, within PP_3564 at 4043.780 kb on + strand at 4043.781 kb on - strand at 4043.810 kb on + strand at 4043.810 kb on + strand at 4043.810 kb on + strand at 4043.810 kb on + strand at 4043.811 kb on - strand at 4043.811 kb on - strand at 4043.811 kb on - strand at 4043.872 kb on + strand at 4043.872 kb on + strand at 4043.872 kb on + strand at 4043.873 kb on - strand at 4043.947 kb on + strand, within PP_3565 at 4043.948 kb on - strand, within PP_3565 at 4044.091 kb on + strand, within PP_3565 at 4044.116 kb on + strand, within PP_3565 at 4044.117 kb on - strand, within PP_3565 at 4044.117 kb on - strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.235 kb on + strand, within PP_3565 at 4044.236 kb on - strand, within PP_3565 at 4044.236 kb on - strand, within PP_3565 at 4044.659 kb on + strand, within PP_3566 at 4044.659 kb on + strand, within PP_3566 at 4044.659 kb on + strand, within PP_3566 at 4044.660 kb on - strand, within PP_3566 at 4044.701 kb on + strand, within PP_3566 at 4044.701 kb on + strand, within PP_3566 at 4044.702 kb on - strand, within PP_3566 at 4044.702 kb on - strand, within PP_3566
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose remove 4,041,864 + -4.0 4,041,865 - -3.7 4,041,865 - +0.9 4,041,865 - -1.2 4,041,900 + +0.3 4,042,150 + PP_3563 0.28 -0.1 4,042,264 + PP_3563 0.41 +0.5 4,042,571 - PP_3563 0.77 -0.1 4,042,700 - -0.5 4,042,706 + -2.5 4,042,707 - -2.7 4,042,732 + +1.3 4,042,733 - -3.3 4,042,762 + +0.3 4,042,762 + -3.8 4,042,763 - +1.0 4,042,807 + -0.5 4,042,842 + -2.7 4,042,842 + +1.5 4,042,842 + +0.9 4,042,842 + -1.3 4,042,843 - +0.8 4,043,207 + PP_3564 0.45 -0.1 4,043,208 - PP_3564 0.45 -0.5 4,043,208 - PP_3564 0.45 -0.8 4,043,225 + PP_3564 0.47 -4.3 4,043,226 - PP_3564 0.47 -4.0 4,043,274 + PP_3564 0.52 +0.3 4,043,274 + PP_3564 0.52 -3.0 4,043,275 - PP_3564 0.52 -0.9 4,043,519 + PP_3564 0.77 -3.3 4,043,520 - PP_3564 0.77 +1.1 4,043,637 + PP_3564 0.89 -2.8 4,043,780 + +0.4 4,043,781 - +0.6 4,043,810 + +1.3 4,043,810 + +0.6 4,043,810 + -2.6 4,043,810 + -3.3 4,043,811 - -2.8 4,043,811 - -0.8 4,043,811 - +1.2 4,043,872 + +0.8 4,043,872 + +2.2 4,043,872 + -0.2 4,043,873 - +0.3 4,043,947 + PP_3565 0.16 -0.2 4,043,948 - PP_3565 0.16 -2.5 4,044,091 + PP_3565 0.40 -1.3 4,044,116 + PP_3565 0.44 +0.3 4,044,117 - PP_3565 0.44 -3.6 4,044,117 - PP_3565 0.44 -4.1 4,044,235 + PP_3565 0.63 +1.1 4,044,235 + PP_3565 0.63 -4.2 4,044,235 + PP_3565 0.63 +0.3 4,044,235 + PP_3565 0.63 +0.2 4,044,235 + PP_3565 0.63 +1.4 4,044,235 + PP_3565 0.63 +0.6 4,044,235 + PP_3565 0.63 -2.3 4,044,235 + PP_3565 0.63 +0.1 4,044,236 - PP_3565 0.63 +1.1 4,044,236 - PP_3565 0.63 +1.5 4,044,659 + PP_3566 0.13 -0.0 4,044,659 + PP_3566 0.13 -3.5 4,044,659 + PP_3566 0.13 -3.3 4,044,660 - PP_3566 0.13 -2.9 4,044,701 + PP_3566 0.16 -4.1 4,044,701 + PP_3566 0.16 +3.3 4,044,702 - PP_3566 0.16 +0.1 4,044,702 - PP_3566 0.16 -4.0
Or see this region's nucleotide sequence