Strain Fitness in Pseudomonas putida KT2440 around PP_3472

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3471 and PP_3472 are separated by 181 nucleotidesPP_3472 and PP_3473 are separated by 34 nucleotidesPP_3473 and PP_3474 overlap by 4 nucleotidesPP_3474 and PP_3475 overlap by 4 nucleotides PP_3471: PP_3471 - conserved protein of unknown function, at 3,937,999 to 3,938,796 _3471 PP_3472: PP_3472 - curli secretion and assembly complex lipoprotein / curli secretion channel, at 3,938,978 to 3,939,826 _3472 PP_3473: PP_3473 - curli secretion and assembly outer membrane associated component, at 3,939,861 to 3,940,274 _3473 PP_3474: PP_3474 - putative Curli fiber protein CsgE, at 3,940,271 to 3,940,672 _3474 PP_3475: PP_3475 - putative type II secretory pathway, pseudopilin pulG-related signal peptide protein, at 3,940,669 to 3,941,199 _3475 Position (kb) 3938 3939 3940Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3938.009 kb on - strandat 3938.160 kb on - strand, within PP_3471at 3938.192 kb on - strand, within PP_3471at 3938.192 kb on - strand, within PP_3471at 3938.411 kb on + strand, within PP_3471at 3938.621 kb on + strand, within PP_3471at 3938.657 kb on + strandat 3938.657 kb on + strand, within PP_3471at 3938.726 kb on - strandat 3938.823 kb on + strandat 3938.968 kb on + strandat 3939.142 kb on + strand, within PP_3472at 3939.142 kb on + strand, within PP_3472at 3939.142 kb on + strand, within PP_3472at 3939.142 kb on + strand, within PP_3472at 3939.143 kb on - strand, within PP_3472at 3939.143 kb on - strand, within PP_3472at 3939.143 kb on - strand, within PP_3472at 3939.143 kb on - strand, within PP_3472at 3939.144 kb on + strand, within PP_3472at 3939.145 kb on - strand, within PP_3472at 3939.217 kb on - strand, within PP_3472at 3939.217 kb on - strand, within PP_3472at 3939.372 kb on + strand, within PP_3472at 3939.447 kb on - strandat 3939.618 kb on + strand, within PP_3472at 3939.618 kb on + strand, within PP_3472at 3939.619 kb on - strand, within PP_3472at 3939.645 kb on + strand, within PP_3472at 3939.645 kb on + strand, within PP_3472at 3939.646 kb on - strand, within PP_3472at 3939.696 kb on + strand, within PP_3472at 3939.696 kb on + strand, within PP_3472at 3939.696 kb on + strand, within PP_3472at 3939.696 kb on + strand, within PP_3472at 3939.697 kb on - strand, within PP_3472at 3939.700 kb on - strand, within PP_3472at 3939.700 kb on - strand, within PP_3472at 3939.845 kb on + strandat 3939.845 kb on + strandat 3939.846 kb on - strandat 3939.846 kb on - strandat 3939.846 kb on - strandat 3940.077 kb on - strand, within PP_3473at 3940.195 kb on + strand, within PP_3473at 3940.195 kb on + strand, within PP_3473at 3940.195 kb on + strand, within PP_3473at 3940.195 kb on + strand, within PP_3473at 3940.196 kb on - strand, within PP_3473at 3940.196 kb on - strand, within PP_3473at 3940.196 kb on - strand, within PP_3473at 3940.274 kb on + strandat 3940.274 kb on + strandat 3940.275 kb on - strandat 3940.275 kb on - strandat 3940.275 kb on - strandat 3940.275 kb on - strandat 3940.275 kb on - strandat 3940.275 kb on - strandat 3940.307 kb on + strandat 3940.390 kb on + strand, within PP_3474at 3940.391 kb on - strand, within PP_3474at 3940.391 kb on - strand, within PP_3474at 3940.479 kb on - strand, within PP_3474at 3940.531 kb on - strand, within PP_3474at 3940.531 kb on - strand, within PP_3474at 3940.531 kb on - strand, within PP_3474at 3940.531 kb on - strand, within PP_3474at 3940.536 kb on + strand, within PP_3474at 3940.758 kb on - strand, within PP_3475

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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3,938,009 - -2.7
3,938,160 - PP_3471 0.20 -3.4
3,938,192 - PP_3471 0.24 +0.7
3,938,192 - PP_3471 0.24 +1.2
3,938,411 + PP_3471 0.52 -1.8
3,938,621 + PP_3471 0.78 +0.7
3,938,657 + -0.2
3,938,657 + PP_3471 0.82 +0.5
3,938,726 - -3.6
3,938,823 + +1.4
3,938,968 + -0.7
3,939,142 + PP_3472 0.19 +1.0
3,939,142 + PP_3472 0.19 -3.2
3,939,142 + PP_3472 0.19 -0.3
3,939,142 + PP_3472 0.19 +0.2
3,939,143 - PP_3472 0.19 -3.2
3,939,143 - PP_3472 0.19 -2.7
3,939,143 - PP_3472 0.19 +0.6
3,939,143 - PP_3472 0.19 -3.6
3,939,144 + PP_3472 0.20 +1.4
3,939,145 - PP_3472 0.20 -2.9
3,939,217 - PP_3472 0.28 -4.0
3,939,217 - PP_3472 0.28 -3.2
3,939,372 + PP_3472 0.46 +1.7
3,939,447 - -0.7
3,939,618 + PP_3472 0.75 -1.3
3,939,618 + PP_3472 0.75 -3.1
3,939,619 - PP_3472 0.76 +1.8
3,939,645 + PP_3472 0.79 -3.1
3,939,645 + PP_3472 0.79 +1.2
3,939,646 - PP_3472 0.79 -2.9
3,939,696 + PP_3472 0.85 +0.9
3,939,696 + PP_3472 0.85 -3.8
3,939,696 + PP_3472 0.85 -3.7
3,939,696 + PP_3472 0.85 -0.1
3,939,697 - PP_3472 0.85 +1.5
3,939,700 - PP_3472 0.85 -3.3
3,939,700 - PP_3472 0.85 +1.5
3,939,845 + -1.5
3,939,845 + -4.2
3,939,846 - -0.1
3,939,846 - +1.0
3,939,846 - +0.4
3,940,077 - PP_3473 0.52 +1.2
3,940,195 + PP_3473 0.81 -2.8
3,940,195 + PP_3473 0.81 +0.7
3,940,195 + PP_3473 0.81 +1.3
3,940,195 + PP_3473 0.81 -2.3
3,940,196 - PP_3473 0.81 -2.6
3,940,196 - PP_3473 0.81 -0.3
3,940,196 - PP_3473 0.81 +2.1
3,940,274 + -3.0
3,940,274 + -0.6
3,940,275 - -0.6
3,940,275 - -3.6
3,940,275 - -0.1
3,940,275 - +0.2
3,940,275 - -3.6
3,940,275 - +1.0
3,940,307 + -1.0
3,940,390 + PP_3474 0.30 +0.6
3,940,391 - PP_3474 0.30 +0.4
3,940,391 - PP_3474 0.30 +0.6
3,940,479 - PP_3474 0.52 +1.3
3,940,531 - PP_3474 0.65 -3.8
3,940,531 - PP_3474 0.65 -2.4
3,940,531 - PP_3474 0.65 -0.9
3,940,531 - PP_3474 0.65 +1.3
3,940,536 + PP_3474 0.66 -0.1
3,940,758 - PP_3475 0.17 -1.4

Or see this region's nucleotide sequence