Strain Fitness in Pseudomonas putida KT2440 around PP_2916

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2914 and PP_2915 are separated by 0 nucleotidesPP_2915 and PP_2916 are separated by 9 nucleotidesPP_2916 and PP_2918 are separated by 172 nucleotides PP_2914: PP_2914 - osmosensory proline/betaine/H+ permease, at 3,313,954 to 3,315,456 _2914 PP_2915: PP_2915 - conserved membrane protein of unknown function, at 3,315,457 to 3,316,158 _2915 PP_2916: PP_2916 - riboflavin synthase, at 3,316,168 to 3,316,797 _2916 PP_2918: PP_2918 - trehalose synthase A, at 3,316,970 to 3,319,036 _2918 Position (kb) 3316 3317Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3315.208 kb on + strand, within PP_2914at 3315.208 kb on + strand, within PP_2914at 3315.208 kb on + strand, within PP_2914at 3315.209 kb on - strand, within PP_2914at 3315.224 kb on - strand, within PP_2914at 3315.471 kb on - strandat 3315.471 kb on - strandat 3315.471 kb on - strandat 3315.704 kb on + strand, within PP_2915at 3315.994 kb on - strandat 3316.106 kb on - strandat 3316.197 kb on + strandat 3316.216 kb on + strandat 3316.217 kb on - strandat 3316.280 kb on + strand, within PP_2916at 3316.281 kb on - strand, within PP_2916at 3316.281 kb on - strand, within PP_2916at 3316.403 kb on + strand, within PP_2916at 3316.403 kb on + strand, within PP_2916at 3316.403 kb on + strand, within PP_2916at 3316.404 kb on - strand, within PP_2916at 3316.660 kb on - strand, within PP_2916at 3316.746 kb on - strandat 3316.793 kb on + strandat 3316.794 kb on - strandat 3316.794 kb on - strandat 3316.794 kb on - strandat 3316.838 kb on + strandat 3316.838 kb on + strandat 3316.839 kb on - strandat 3316.855 kb on - strandat 3317.344 kb on - strand, within PP_2918at 3317.541 kb on + strand, within PP_2918at 3317.541 kb on + strand, within PP_2918at 3317.542 kb on - strand, within PP_2918at 3317.542 kb on - strand, within PP_2918at 3317.542 kb on - strand, within PP_2918at 3317.683 kb on - strand, within PP_2918at 3317.683 kb on - strand, within PP_2918at 3317.712 kb on + strand, within PP_2918at 3317.713 kb on - strand, within PP_2918at 3317.713 kb on - strand, within PP_2918at 3317.713 kb on - strand, within PP_2918at 3317.769 kb on + strand, within PP_2918at 3317.770 kb on - strand, within PP_2918at 3317.770 kb on - strand, within PP_2918at 3317.770 kb on - strand, within PP_2918at 3317.770 kb on - strand, within PP_2918at 3317.775 kb on + strand, within PP_2918at 3317.776 kb on - strand, within PP_2918at 3317.776 kb on - strand, within PP_2918at 3317.779 kb on + strand, within PP_2918at 3317.779 kb on + strand, within PP_2918at 3317.780 kb on - strand, within PP_2918at 3317.780 kb on - strand, within PP_2918at 3317.780 kb on - strand, within PP_2918at 3317.780 kb on - strand, within PP_2918

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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3,315,208 + PP_2914 0.83 -0.1
3,315,208 + PP_2914 0.83 -0.4
3,315,208 + PP_2914 0.83 -4.0
3,315,209 - PP_2914 0.83 +0.4
3,315,224 - PP_2914 0.84 +1.5
3,315,471 - -0.6
3,315,471 - +0.5
3,315,471 - +1.0
3,315,704 + PP_2915 0.35 -1.4
3,315,994 - +4.4
3,316,106 - +2.4
3,316,197 + -1.0
3,316,216 + +2.0
3,316,217 - +2.9
3,316,280 + PP_2916 0.18 +1.3
3,316,281 - PP_2916 0.18 -1.5
3,316,281 - PP_2916 0.18 +1.2
3,316,403 + PP_2916 0.37 +0.3
3,316,403 + PP_2916 0.37 +1.5
3,316,403 + PP_2916 0.37 +0.5
3,316,404 - PP_2916 0.37 +0.7
3,316,660 - PP_2916 0.78 -2.0
3,316,746 - +0.6
3,316,793 + +1.8
3,316,794 - +2.3
3,316,794 - -3.9
3,316,794 - +1.6
3,316,838 + -2.0
3,316,838 + +0.5
3,316,839 - -0.2
3,316,855 - +1.2
3,317,344 - PP_2918 0.18 -1.2
3,317,541 + PP_2918 0.28 +1.3
3,317,541 + PP_2918 0.28 +0.3
3,317,542 - PP_2918 0.28 +1.4
3,317,542 - PP_2918 0.28 +0.9
3,317,542 - PP_2918 0.28 -2.3
3,317,683 - PP_2918 0.34 -3.6
3,317,683 - PP_2918 0.34 +1.0
3,317,712 + PP_2918 0.36 -0.1
3,317,713 - PP_2918 0.36 -0.9
3,317,713 - PP_2918 0.36 +0.1
3,317,713 - PP_2918 0.36 +0.1
3,317,769 + PP_2918 0.39 -3.6
3,317,770 - PP_2918 0.39 -3.6
3,317,770 - PP_2918 0.39 -0.2
3,317,770 - PP_2918 0.39 +1.3
3,317,770 - PP_2918 0.39 -0.2
3,317,775 + PP_2918 0.39 +0.1
3,317,776 - PP_2918 0.39 -3.6
3,317,776 - PP_2918 0.39 +0.9
3,317,779 + PP_2918 0.39 +0.2
3,317,779 + PP_2918 0.39 -0.9
3,317,780 - PP_2918 0.39 +1.0
3,317,780 - PP_2918 0.39 -0.6
3,317,780 - PP_2918 0.39 +0.8
3,317,780 - PP_2918 0.39 +0.3

Or see this region's nucleotide sequence