Strain Fitness in Pseudomonas putida KT2440 around PP_1454

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1452 and PP_1453 are separated by 123 nucleotidesPP_1453 and PP_1454 are separated by 43 nucleotidesPP_1454 and PP_1455 overlap by 32 nucleotidesPP_1455 and PP_1456 are separated by 77 nucleotidesPP_1456 and PP_1457 are separated by 76 nucleotides PP_1452: PP_1452 - MutT/nudix family protein, at 1,659,216 to 1,659,767 _1452 PP_1453: PP_1453 - putative NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity, at 1,659,891 to 1,660,490 _1453 PP_1454: PP_1454 - conserved protein of unknown function, at 1,660,534 to 1,661,058 _1454 PP_1455: PP_1455 - conserved protein of unknown function, at 1,661,027 to 1,661,251 _1455 PP_1456: PP_1456 - conserved membrane protein of unknown function, at 1,661,329 to 1,661,796 _1456 PP_1457: PP_1457 - Phosphoribosylglycinamide formyltransferase 2, at 1,661,873 to 1,663,054 _1457 Position (kb) 1660 1661 1662Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1659.639 kb on + strand, within PP_1452at 1659.640 kb on - strand, within PP_1452at 1659.697 kb on + strandat 1659.698 kb on - strand, within PP_1452at 1659.791 kb on + strandat 1659.791 kb on + strandat 1659.877 kb on + strandat 1659.878 kb on - strandat 1659.904 kb on + strandat 1660.041 kb on - strand, within PP_1453at 1660.058 kb on - strand, within PP_1453at 1660.193 kb on - strand, within PP_1453at 1660.226 kb on + strand, within PP_1453at 1660.276 kb on + strand, within PP_1453at 1660.277 kb on - strand, within PP_1453at 1660.323 kb on - strand, within PP_1453at 1660.323 kb on - strand, within PP_1453at 1660.332 kb on - strand, within PP_1453at 1660.349 kb on + strand, within PP_1453at 1660.349 kb on + strand, within PP_1453at 1660.349 kb on + strand, within PP_1453at 1660.349 kb on + strand, within PP_1453at 1660.350 kb on - strand, within PP_1453at 1660.356 kb on + strand, within PP_1453at 1660.356 kb on + strand, within PP_1453at 1660.356 kb on + strand, within PP_1453at 1660.357 kb on - strandat 1660.357 kb on - strand, within PP_1453at 1660.357 kb on - strand, within PP_1453at 1660.368 kb on + strand, within PP_1453at 1660.369 kb on - strand, within PP_1453at 1660.374 kb on + strand, within PP_1453at 1660.383 kb on + strand, within PP_1453at 1660.383 kb on + strand, within PP_1453at 1660.383 kb on + strand, within PP_1453at 1660.383 kb on + strand, within PP_1453at 1660.383 kb on + strand, within PP_1453at 1660.383 kb on + strand, within PP_1453at 1660.384 kb on - strand, within PP_1453at 1660.384 kb on - strand, within PP_1453at 1660.384 kb on - strand, within PP_1453at 1660.498 kb on + strandat 1660.669 kb on - strand, within PP_1454at 1660.953 kb on - strand, within PP_1454at 1661.005 kb on + strand, within PP_1454at 1661.005 kb on + strand, within PP_1454at 1661.005 kb on + strand, within PP_1454at 1661.006 kb on - strandat 1661.006 kb on - strandat 1661.006 kb on - strandat 1661.006 kb on - strandat 1661.140 kb on + strand, within PP_1455at 1661.223 kb on + strand, within PP_1455at 1661.224 kb on - strand, within PP_1455at 1661.224 kb on - strand, within PP_1455at 1661.263 kb on + strandat 1661.263 kb on + strandat 1661.264 kb on - strandat 1661.335 kb on + strandat 1661.335 kb on + strandat 1661.336 kb on - strandat 1661.347 kb on + strandat 1661.347 kb on + strandat 1661.347 kb on + strandat 1661.361 kb on - strandat 1661.361 kb on - strandat 1661.374 kb on + strandat 1661.374 kb on + strandat 1661.375 kb on - strandat 1661.375 kb on - strandat 1661.375 kb on - strandat 1661.512 kb on + strand, within PP_1456at 1661.512 kb on + strand, within PP_1456at 1661.512 kb on + strand, within PP_1456at 1661.512 kb on + strand, within PP_1456at 1661.513 kb on - strand, within PP_1456at 1661.513 kb on - strand, within PP_1456at 1661.513 kb on - strand, within PP_1456at 1661.513 kb on - strand, within PP_1456at 1661.658 kb on + strand, within PP_1456at 1661.658 kb on + strand, within PP_1456at 1661.659 kb on - strand, within PP_1456at 1661.802 kb on + strandat 1661.802 kb on + strandat 1661.803 kb on - strandat 1661.803 kb on - strandat 1661.916 kb on + strandat 1661.917 kb on - strandat 1661.985 kb on + strandat 1661.985 kb on + strandat 1661.985 kb on + strandat 1661.985 kb on + strandat 1662.002 kb on + strand, within PP_1457at 1662.002 kb on + strand, within PP_1457

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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1,659,639 + PP_1452 0.77 +0.3
1,659,640 - PP_1452 0.77 +0.5
1,659,697 + -1.0
1,659,698 - PP_1452 0.87 -0.9
1,659,791 + +1.4
1,659,791 + -3.5
1,659,877 + +0.7
1,659,878 - +0.7
1,659,904 + +0.4
1,660,041 - PP_1453 0.25 +0.9
1,660,058 - PP_1453 0.28 -2.6
1,660,193 - PP_1453 0.50 +0.3
1,660,226 + PP_1453 0.56 -3.6
1,660,276 + PP_1453 0.64 +0.9
1,660,277 - PP_1453 0.64 +0.7
1,660,323 - PP_1453 0.72 -0.6
1,660,323 - PP_1453 0.72 +0.9
1,660,332 - PP_1453 0.73 +0.7
1,660,349 + PP_1453 0.76 -4.0
1,660,349 + PP_1453 0.76 -3.0
1,660,349 + PP_1453 0.76 -2.9
1,660,349 + PP_1453 0.76 +1.2
1,660,350 - PP_1453 0.77 -4.3
1,660,356 + PP_1453 0.78 +0.1
1,660,356 + PP_1453 0.78 -4.2
1,660,356 + PP_1453 0.78 -0.3
1,660,357 - -0.5
1,660,357 - PP_1453 0.78 +0.5
1,660,357 - PP_1453 0.78 -2.8
1,660,368 + PP_1453 0.80 -3.2
1,660,369 - PP_1453 0.80 +0.9
1,660,374 + PP_1453 0.81 -3.0
1,660,383 + PP_1453 0.82 -1.0
1,660,383 + PP_1453 0.82 -3.5
1,660,383 + PP_1453 0.82 -4.4
1,660,383 + PP_1453 0.82 -1.0
1,660,383 + PP_1453 0.82 -1.9
1,660,383 + PP_1453 0.82 +0.3
1,660,384 - PP_1453 0.82 -2.3
1,660,384 - PP_1453 0.82 -3.2
1,660,384 - PP_1453 0.82 -4.3
1,660,498 + -0.5
1,660,669 - PP_1454 0.26 -1.9
1,660,953 - PP_1454 0.80 -1.0
1,661,005 + PP_1454 0.90 +0.4
1,661,005 + PP_1454 0.90 -2.0
1,661,005 + PP_1454 0.90 -3.9
1,661,006 - -0.2
1,661,006 - +0.9
1,661,006 - -3.5
1,661,006 - -1.6
1,661,140 + PP_1455 0.50 -1.3
1,661,223 + PP_1455 0.87 -0.5
1,661,224 - PP_1455 0.88 -0.3
1,661,224 - PP_1455 0.88 -2.0
1,661,263 + -3.6
1,661,263 + +1.0
1,661,264 - +1.6
1,661,335 + -3.2
1,661,335 + -3.7
1,661,336 - -0.3
1,661,347 + +2.0
1,661,347 + -1.2
1,661,347 + -0.4
1,661,361 - +1.7
1,661,361 - +0.2
1,661,374 + +0.0
1,661,374 + -1.7
1,661,375 - -0.7
1,661,375 - -1.6
1,661,375 - +1.3
1,661,512 + PP_1456 0.39 -2.8
1,661,512 + PP_1456 0.39 +2.3
1,661,512 + PP_1456 0.39 +0.5
1,661,512 + PP_1456 0.39 -2.0
1,661,513 - PP_1456 0.39 +0.0
1,661,513 - PP_1456 0.39 -0.4
1,661,513 - PP_1456 0.39 +1.5
1,661,513 - PP_1456 0.39 -2.5
1,661,658 + PP_1456 0.70 +0.3
1,661,658 + PP_1456 0.70 +0.3
1,661,659 - PP_1456 0.71 -2.7
1,661,802 + -2.3
1,661,802 + -0.2
1,661,803 - -3.3
1,661,803 - +0.3
1,661,916 + +0.9
1,661,917 - -2.0
1,661,985 + +1.2
1,661,985 + +2.4
1,661,985 + +0.5
1,661,985 + -2.7
1,662,002 + PP_1457 0.11 +2.0
1,662,002 + PP_1457 0.11 -0.9

Or see this region's nucleotide sequence