Strain Fitness in Pseudomonas putida KT2440 around PP_0270

Experiment: Growth at pH6 and (C) D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0269 and PP_0270 are separated by 149 nucleotidesPP_0270 and PP_0271 are separated by 1 nucleotidesPP_0271 and PP_0272 are separated by 140 nucleotides PP_0269: PP_0269 - putative Glutamate synthase, large subunit, at 326,065 to 327,732 _0269 PP_0270: PP_0270 - Sensor histidine kinase, at 327,882 to 329,249 _0270 PP_0271: PP_0271 - DNA-binding response regulator, at 329,251 to 329,970 _0271 PP_0272: PP_0272 - Outer membrane ferric siderophore receptor, at 330,111 to 332,408 _0272 Position (kb) 327 328 329 330Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 327.089 kb on + strand, within PP_0269at 327.270 kb on - strand, within PP_0269at 327.431 kb on + strand, within PP_0269at 327.492 kb on - strand, within PP_0269at 327.534 kb on + strand, within PP_0269at 327.535 kb on - strand, within PP_0269at 327.694 kb on + strandat 327.695 kb on - strandat 327.763 kb on - strandat 327.763 kb on - strandat 327.767 kb on + strandat 327.767 kb on + strandat 327.797 kb on + strandat 327.815 kb on + strandat 327.815 kb on + strandat 327.849 kb on + strandat 327.849 kb on + strandat 327.849 kb on + strandat 327.849 kb on + strandat 327.849 kb on + strandat 327.850 kb on - strandat 327.850 kb on - strandat 327.850 kb on - strandat 327.850 kb on - strandat 327.897 kb on + strandat 327.897 kb on + strandat 327.897 kb on + strandat 327.898 kb on - strandat 327.898 kb on - strandat 327.898 kb on - strandat 327.898 kb on - strandat 327.898 kb on - strandat 327.936 kb on + strandat 327.937 kb on - strandat 327.937 kb on - strandat 328.150 kb on + strand, within PP_0270at 328.358 kb on + strandat 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.358 kb on + strand, within PP_0270at 328.359 kb on - strand, within PP_0270at 328.359 kb on - strand, within PP_0270at 328.359 kb on - strand, within PP_0270at 328.359 kb on - strand, within PP_0270at 328.483 kb on + strand, within PP_0270at 328.483 kb on + strand, within PP_0270at 328.484 kb on - strand, within PP_0270at 328.484 kb on - strand, within PP_0270at 328.699 kb on + strand, within PP_0270at 328.700 kb on - strand, within PP_0270at 328.700 kb on - strand, within PP_0270at 328.715 kb on - strand, within PP_0270at 328.817 kb on + strand, within PP_0270at 328.905 kb on + strand, within PP_0270at 328.905 kb on + strand, within PP_0270at 328.906 kb on - strand, within PP_0270at 328.906 kb on - strand, within PP_0270at 328.906 kb on - strand, within PP_0270at 328.930 kb on + strand, within PP_0270at 328.931 kb on - strand, within PP_0270at 329.027 kb on - strand, within PP_0270at 329.027 kb on - strand, within PP_0270at 329.049 kb on - strand, within PP_0270at 329.107 kb on - strand, within PP_0270at 329.118 kb on + strandat 329.288 kb on + strandat 329.288 kb on + strandat 329.288 kb on + strandat 329.289 kb on - strandat 329.480 kb on + strand, within PP_0271at 329.580 kb on + strand, within PP_0271at 329.580 kb on + strand, within PP_0271at 329.580 kb on + strand, within PP_0271at 329.580 kb on + strand, within PP_0271at 329.580 kb on + strand, within PP_0271at 329.581 kb on - strand, within PP_0271at 329.623 kb on + strand, within PP_0271at 329.624 kb on - strand, within PP_0271at 329.676 kb on - strand, within PP_0271at 329.784 kb on + strand, within PP_0271at 329.785 kb on - strand, within PP_0271at 329.910 kb on - strandat 329.910 kb on - strandat 330.011 kb on + strandat 330.012 kb on - strandat 330.012 kb on - strandat 330.022 kb on - strandat 330.022 kb on - strandat 330.022 kb on - strandat 330.022 kb on - strandat 330.031 kb on + strandat 330.031 kb on + strandat 330.031 kb on + strandat 330.031 kb on + strandat 330.031 kb on + strandat 330.031 kb on + strandat 330.032 kb on - strandat 330.032 kb on - strandat 330.032 kb on - strandat 330.032 kb on - strandat 330.032 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth at pH6 and (C) D-Glucose
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327,089 + PP_0269 0.61 +1.1
327,270 - PP_0269 0.72 -0.6
327,431 + PP_0269 0.82 -3.1
327,492 - PP_0269 0.86 -1.0
327,534 + PP_0269 0.88 -2.7
327,535 - PP_0269 0.88 -0.9
327,694 + +0.8
327,695 - -3.4
327,763 - +0.7
327,763 - +1.0
327,767 + -1.7
327,767 + -3.3
327,797 + -3.3
327,815 + -3.0
327,815 + -4.3
327,849 + +1.5
327,849 + -1.4
327,849 + -1.9
327,849 + -2.0
327,849 + -1.1
327,850 - -2.8
327,850 - +1.3
327,850 - +2.6
327,850 - -1.7
327,897 + -2.8
327,897 + +1.0
327,897 + +0.1
327,898 - +0.5
327,898 - +1.9
327,898 - +1.9
327,898 - -2.2
327,898 - -3.2
327,936 + -0.5
327,937 - +1.0
327,937 - -3.8
328,150 + PP_0270 0.20 -0.2
328,358 + -0.5
328,358 + PP_0270 0.35 -0.6
328,358 + PP_0270 0.35 +0.0
328,358 + PP_0270 0.35 -2.3
328,358 + PP_0270 0.35 +2.5
328,358 + PP_0270 0.35 +0.5
328,358 + PP_0270 0.35 -3.3
328,358 + PP_0270 0.35 +1.6
328,359 - PP_0270 0.35 -2.2
328,359 - PP_0270 0.35 -1.6
328,359 - PP_0270 0.35 -3.1
328,359 - PP_0270 0.35 +1.6
328,483 + PP_0270 0.44 +1.8
328,483 + PP_0270 0.44 +1.5
328,484 - PP_0270 0.44 -2.5
328,484 - PP_0270 0.44 +0.1
328,699 + PP_0270 0.60 +2.2
328,700 - PP_0270 0.60 +2.7
328,700 - PP_0270 0.60 -1.8
328,715 - PP_0270 0.61 -2.9
328,817 + PP_0270 0.68 +0.5
328,905 + PP_0270 0.75 +1.0
328,905 + PP_0270 0.75 -2.1
328,906 - PP_0270 0.75 +1.2
328,906 - PP_0270 0.75 -3.1
328,906 - PP_0270 0.75 -0.6
328,930 + PP_0270 0.77 +1.6
328,931 - PP_0270 0.77 +1.0
329,027 - PP_0270 0.84 +2.0
329,027 - PP_0270 0.84 +0.9
329,049 - PP_0270 0.85 -3.6
329,107 - PP_0270 0.90 +1.2
329,118 + -3.3
329,288 + +0.9
329,288 + -0.4
329,288 + -1.3
329,289 - -2.6
329,480 + PP_0271 0.32 -2.4
329,580 + PP_0271 0.46 +2.3
329,580 + PP_0271 0.46 +0.5
329,580 + PP_0271 0.46 +0.3
329,580 + PP_0271 0.46 -4.8
329,580 + PP_0271 0.46 +1.4
329,581 - PP_0271 0.46 -0.7
329,623 + PP_0271 0.52 +0.4
329,624 - PP_0271 0.52 -3.5
329,676 - PP_0271 0.59 -0.8
329,784 + PP_0271 0.74 -1.4
329,785 - PP_0271 0.74 -0.6
329,910 - +0.5
329,910 - +2.2
330,011 + -3.4
330,012 - +1.9
330,012 - +1.8
330,022 - +0.3
330,022 - +0.9
330,022 - +1.3
330,022 - +3.7
330,031 + +0.9
330,031 + -3.4
330,031 + +1.3
330,031 + -0.2
330,031 + -3.3
330,031 + +0.0
330,032 - -3.1
330,032 - +0.8
330,032 - +0.9
330,032 - +0.9
330,032 - -3.0

Or see this region's nucleotide sequence