Strain Fitness in Pseudomonas putida KT2440 around PP_5153

Experiment: Growth with Chloride 200 mM; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5152 and PP_5153 are separated by 182 nucleotidesPP_5153 and PP_5154 are separated by 26 nucleotides PP_5152: PP_5152 - conserved exported protein of unknown function, at 5,878,076 to 5,878,996 _5152 PP_5153: PP_5153 - putative isomerase/hydrolase, at 5,879,179 to 5,879,844 _5153 PP_5154: PP_5154 - putative Oxidoreductase, FAD-binding, at 5,879,871 to 5,881,238 _5154 Position (kb) 5879 5880Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5878.393 kb on - strand, within PP_5152at 5878.393 kb on - strand, within PP_5152at 5878.497 kb on + strand, within PP_5152at 5878.498 kb on - strand, within PP_5152at 5878.655 kb on + strand, within PP_5152at 5878.656 kb on - strand, within PP_5152at 5878.656 kb on - strand, within PP_5152at 5878.800 kb on + strand, within PP_5152at 5878.801 kb on - strand, within PP_5152at 5878.814 kb on + strand, within PP_5152at 5878.814 kb on + strand, within PP_5152at 5878.815 kb on - strand, within PP_5152at 5878.950 kb on + strandat 5878.951 kb on - strandat 5878.951 kb on - strandat 5878.951 kb on - strandat 5879.021 kb on + strandat 5879.021 kb on + strandat 5879.103 kb on - strandat 5879.112 kb on + strandat 5879.112 kb on + strandat 5879.113 kb on - strandat 5879.138 kb on - strandat 5879.138 kb on - strandat 5879.358 kb on + strand, within PP_5153at 5879.358 kb on + strand, within PP_5153at 5879.359 kb on - strand, within PP_5153at 5879.359 kb on - strand, within PP_5153at 5879.359 kb on - strand, within PP_5153at 5879.362 kb on - strand, within PP_5153at 5879.362 kb on - strand, within PP_5153at 5879.362 kb on - strand, within PP_5153at 5879.362 kb on - strand, within PP_5153at 5879.374 kb on + strand, within PP_5153at 5879.636 kb on + strand, within PP_5153at 5879.637 kb on - strand, within PP_5153at 5879.765 kb on + strand, within PP_5153at 5879.765 kb on + strand, within PP_5153at 5879.765 kb on + strand, within PP_5153at 5879.766 kb on - strandat 5879.766 kb on - strand, within PP_5153at 5879.821 kb on + strandat 5879.821 kb on + strandat 5879.821 kb on + strandat 5879.821 kb on + strandat 5879.822 kb on - strandat 5879.825 kb on + strandat 5879.825 kb on + strandat 5879.826 kb on - strandat 5879.826 kb on - strandat 5879.838 kb on - strandat 5879.912 kb on + strandat 5879.931 kb on + strandat 5879.931 kb on + strandat 5879.931 kb on + strandat 5879.931 kb on + strandat 5879.931 kb on + strandat 5879.932 kb on - strandat 5879.932 kb on - strandat 5879.932 kb on - strandat 5879.932 kb on - strandat 5879.971 kb on + strandat 5879.971 kb on + strandat 5879.980 kb on + strandat 5880.031 kb on + strand, within PP_5154at 5880.101 kb on + strand, within PP_5154at 5880.101 kb on + strand, within PP_5154at 5880.101 kb on + strand, within PP_5154at 5880.101 kb on + strand, within PP_5154at 5880.101 kb on + strand, within PP_5154at 5880.102 kb on - strand, within PP_5154at 5880.102 kb on - strand, within PP_5154at 5880.102 kb on - strand, within PP_5154at 5880.102 kb on - strand, within PP_5154at 5880.102 kb on - strand, within PP_5154at 5880.154 kb on + strand, within PP_5154at 5880.155 kb on - strand, within PP_5154at 5880.170 kb on - strand, within PP_5154at 5880.256 kb on + strand, within PP_5154at 5880.289 kb on + strand, within PP_5154at 5880.290 kb on - strand, within PP_5154at 5880.290 kb on - strand, within PP_5154at 5880.383 kb on + strand, within PP_5154at 5880.439 kb on + strand, within PP_5154at 5880.439 kb on + strand, within PP_5154at 5880.440 kb on - strand, within PP_5154at 5880.440 kb on - strand, within PP_5154at 5880.794 kb on + strand, within PP_5154at 5880.794 kb on + strand, within PP_5154at 5880.794 kb on + strand, within PP_5154

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth with Chloride 200 mM; with MOPS
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5,878,393 - PP_5152 0.34 +1.6
5,878,393 - PP_5152 0.34 +1.2
5,878,497 + PP_5152 0.46 -0.5
5,878,498 - PP_5152 0.46 -0.1
5,878,655 + PP_5152 0.63 +0.8
5,878,656 - PP_5152 0.63 +2.0
5,878,656 - PP_5152 0.63 -3.4
5,878,800 + PP_5152 0.79 +1.1
5,878,801 - PP_5152 0.79 -0.3
5,878,814 + PP_5152 0.80 +0.9
5,878,814 + PP_5152 0.80 -1.8
5,878,815 - PP_5152 0.80 -3.3
5,878,950 + -2.1
5,878,951 - +0.2
5,878,951 - -1.5
5,878,951 - +0.5
5,879,021 + +1.0
5,879,021 + -2.5
5,879,103 - -0.4
5,879,112 + -0.1
5,879,112 + -2.4
5,879,113 - -1.5
5,879,138 - -2.3
5,879,138 - +0.1
5,879,358 + PP_5153 0.27 +1.4
5,879,358 + PP_5153 0.27 -0.2
5,879,359 - PP_5153 0.27 +1.0
5,879,359 - PP_5153 0.27 -1.3
5,879,359 - PP_5153 0.27 +0.3
5,879,362 - PP_5153 0.27 -3.5
5,879,362 - PP_5153 0.27 +1.4
5,879,362 - PP_5153 0.27 +1.9
5,879,362 - PP_5153 0.27 +0.4
5,879,374 + PP_5153 0.29 +1.4
5,879,636 + PP_5153 0.69 +1.1
5,879,637 - PP_5153 0.69 +0.8
5,879,765 + PP_5153 0.88 +1.1
5,879,765 + PP_5153 0.88 +3.3
5,879,765 + PP_5153 0.88 -4.4
5,879,766 - -0.1
5,879,766 - PP_5153 0.88 -0.1
5,879,821 + -2.2
5,879,821 + +1.5
5,879,821 + +1.8
5,879,821 + -1.0
5,879,822 - +1.1
5,879,825 + +2.7
5,879,825 + -3.4
5,879,826 - +0.5
5,879,826 - +0.2
5,879,838 - +2.3
5,879,912 + +0.7
5,879,931 + +0.5
5,879,931 + +0.1
5,879,931 + +0.9
5,879,931 + +0.3
5,879,931 + +1.0
5,879,932 - -2.4
5,879,932 - +0.4
5,879,932 - -1.1
5,879,932 - +1.2
5,879,971 + -0.2
5,879,971 + -1.1
5,879,980 + -0.1
5,880,031 + PP_5154 0.12 +0.0
5,880,101 + PP_5154 0.17 -1.4
5,880,101 + PP_5154 0.17 -0.9
5,880,101 + PP_5154 0.17 +0.6
5,880,101 + PP_5154 0.17 +0.6
5,880,101 + PP_5154 0.17 -0.5
5,880,102 - PP_5154 0.17 -0.1
5,880,102 - PP_5154 0.17 -4.1
5,880,102 - PP_5154 0.17 +1.2
5,880,102 - PP_5154 0.17 -3.6
5,880,102 - PP_5154 0.17 +0.9
5,880,154 + PP_5154 0.21 +1.9
5,880,155 - PP_5154 0.21 +1.3
5,880,170 - PP_5154 0.22 +1.3
5,880,256 + PP_5154 0.28 +1.4
5,880,289 + PP_5154 0.31 +0.3
5,880,290 - PP_5154 0.31 -3.3
5,880,290 - PP_5154 0.31 +0.4
5,880,383 + PP_5154 0.37 +0.9
5,880,439 + PP_5154 0.42 +1.3
5,880,439 + PP_5154 0.42 -0.6
5,880,440 - PP_5154 0.42 +1.7
5,880,440 - PP_5154 0.42 +1.7
5,880,794 + PP_5154 0.67 +0.6
5,880,794 + PP_5154 0.67 -1.8
5,880,794 + PP_5154 0.67 -3.9

Or see this region's nucleotide sequence