Strain Fitness in Pseudomonas putida KT2440 around PP_5115

Experiment: NAG (N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5113 and PP_5114 overlap by 1 nucleotidesPP_5114 and PP_5115 are separated by 90 nucleotidesPP_5115 and PP_5116 overlap by 8 nucleotides PP_5113: PP_5113 - predicted Zn-dependent peptidases, at 5,833,723 to 5,835,213 _5113 PP_5114: PP_5114 - putative adenine methyltransferase, at 5,835,213 to 5,835,815 _5114 PP_5115: PP_5115 - putative Zinc protease, at 5,835,906 to 5,837,207 _5115 PP_5116: PP_5116 - conserved protein of unknown function, at 5,837,200 to 5,838,570 _5116 Position (kb) 5835 5836 5837 5838Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 5835.010 kb on + strand, within PP_5113at 5835.011 kb on - strand, within PP_5113at 5835.211 kb on + strandat 5835.212 kb on - strandat 5835.387 kb on + strand, within PP_5114at 5835.387 kb on + strand, within PP_5114at 5835.426 kb on - strand, within PP_5114at 5835.705 kb on + strand, within PP_5114at 5835.706 kb on - strand, within PP_5114at 5835.792 kb on + strandat 5835.793 kb on - strandat 5835.793 kb on - strandat 5835.838 kb on + strandat 5835.838 kb on + strandat 5835.838 kb on + strandat 5835.838 kb on + strandat 5835.838 kb on + strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.839 kb on - strandat 5835.880 kb on - strandat 5835.956 kb on + strandat 5835.957 kb on - strandat 5836.036 kb on + strandat 5836.036 kb on + strandat 5836.037 kb on - strand, within PP_5115at 5836.037 kb on - strand, within PP_5115at 5836.037 kb on - strand, within PP_5115at 5836.037 kb on - strand, within PP_5115at 5836.094 kb on - strand, within PP_5115at 5836.094 kb on - strand, within PP_5115at 5836.094 kb on - strand, within PP_5115at 5836.094 kb on - strand, within PP_5115at 5836.132 kb on - strand, within PP_5115at 5836.179 kb on + strand, within PP_5115at 5836.180 kb on - strand, within PP_5115at 5836.195 kb on + strand, within PP_5115at 5836.196 kb on - strand, within PP_5115at 5836.280 kb on + strand, within PP_5115at 5836.383 kb on + strand, within PP_5115at 5836.384 kb on - strand, within PP_5115at 5836.391 kb on + strand, within PP_5115at 5836.467 kb on + strand, within PP_5115at 5836.467 kb on + strand, within PP_5115at 5836.468 kb on - strand, within PP_5115at 5836.468 kb on - strand, within PP_5115at 5836.480 kb on - strand, within PP_5115at 5836.529 kb on - strand, within PP_5115at 5836.529 kb on - strand, within PP_5115at 5836.534 kb on + strand, within PP_5115at 5836.672 kb on + strand, within PP_5115at 5836.673 kb on - strand, within PP_5115at 5836.673 kb on - strand, within PP_5115at 5836.685 kb on - strand, within PP_5115at 5836.685 kb on - strand, within PP_5115at 5836.722 kb on + strand, within PP_5115at 5836.761 kb on + strand, within PP_5115at 5836.762 kb on - strand, within PP_5115at 5836.812 kb on + strand, within PP_5115at 5836.812 kb on + strand, within PP_5115at 5836.813 kb on - strand, within PP_5115at 5836.813 kb on - strand, within PP_5115at 5836.827 kb on + strand, within PP_5115at 5836.827 kb on + strand, within PP_5115at 5836.827 kb on + strand, within PP_5115at 5836.827 kb on + strand, within PP_5115at 5836.827 kb on + strand, within PP_5115at 5836.827 kb on + strand, within PP_5115at 5836.827 kb on + strand, within PP_5115at 5836.828 kb on - strand, within PP_5115at 5836.828 kb on - strand, within PP_5115at 5836.828 kb on - strand, within PP_5115at 5836.867 kb on - strand, within PP_5115at 5837.045 kb on + strand, within PP_5115at 5837.045 kb on + strand, within PP_5115at 5837.073 kb on - strand, within PP_5115at 5837.125 kb on + strandat 5837.125 kb on + strandat 5837.125 kb on + strandat 5837.125 kb on + strandat 5837.126 kb on - strandat 5837.304 kb on + strandat 5837.304 kb on + strandat 5837.305 kb on - strandat 5837.305 kb on - strandat 5837.305 kb on - strandat 5837.387 kb on + strand, within PP_5116at 5837.388 kb on - strand, within PP_5116at 5837.388 kb on - strand, within PP_5116at 5837.390 kb on + strand, within PP_5116at 5837.390 kb on + strand, within PP_5116at 5837.390 kb on + strand, within PP_5116at 5837.391 kb on - strand, within PP_5116at 5837.425 kb on + strand, within PP_5116at 5837.425 kb on + strand, within PP_5116at 5837.479 kb on + strand, within PP_5116at 5837.479 kb on + strand, within PP_5116at 5837.479 kb on + strand, within PP_5116at 5837.480 kb on - strand, within PP_5116at 5837.480 kb on - strand, within PP_5116at 5837.540 kb on + strand, within PP_5116at 5837.540 kb on + strand, within PP_5116at 5837.540 kb on + strand, within PP_5116at 5837.540 kb on + strand, within PP_5116at 5837.540 kb on + strand, within PP_5116at 5837.540 kb on + strand, within PP_5116at 5837.578 kb on - strand, within PP_5116at 5837.727 kb on + strand, within PP_5116at 5837.727 kb on + strand, within PP_5116at 5837.728 kb on - strand, within PP_5116at 5837.796 kb on + strand, within PP_5116at 5837.796 kb on + strand, within PP_5116at 5837.809 kb on - strand, within PP_5116at 5837.845 kb on + strand, within PP_5116at 5837.846 kb on - strand, within PP_5116at 5837.846 kb on - strand, within PP_5116at 5837.846 kb on - strand, within PP_5116at 5837.846 kb on - strand, within PP_5116at 5837.846 kb on - strand, within PP_5116at 5837.960 kb on + strand, within PP_5116at 5838.051 kb on - strand, within PP_5116at 5838.051 kb on - strand, within PP_5116at 5838.160 kb on + strand, within PP_5116at 5838.161 kb on - strand, within PP_5116at 5838.179 kb on + strand, within PP_5116at 5838.179 kb on + strand, within PP_5116at 5838.179 kb on + strand, within PP_5116at 5838.179 kb on + strand, within PP_5116at 5838.180 kb on - strand, within PP_5116

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N); with MOPS
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5,835,010 + PP_5113 0.86 -1.9
5,835,011 - PP_5113 0.86 -2.7
5,835,211 + +2.9
5,835,212 - +1.1
5,835,387 + PP_5114 0.29 +0.9
5,835,387 + PP_5114 0.29 -2.4
5,835,426 - PP_5114 0.35 -2.2
5,835,705 + PP_5114 0.82 +2.4
5,835,706 - PP_5114 0.82 -1.5
5,835,792 + +0.9
5,835,793 - +1.5
5,835,793 - -0.5
5,835,838 + +0.9
5,835,838 + -0.8
5,835,838 + +2.0
5,835,838 + +0.7
5,835,838 + +0.4
5,835,839 - -2.8
5,835,839 - -3.8
5,835,839 - -2.7
5,835,839 - -3.5
5,835,839 - +0.2
5,835,839 - -2.2
5,835,839 - -0.7
5,835,839 - -3.2
5,835,839 - +0.8
5,835,880 - +0.8
5,835,956 + -2.4
5,835,957 - -0.4
5,836,036 + -0.7
5,836,036 + +3.1
5,836,037 - PP_5115 0.10 +0.5
5,836,037 - PP_5115 0.10 -1.6
5,836,037 - PP_5115 0.10 -2.8
5,836,037 - PP_5115 0.10 -3.0
5,836,094 - PP_5115 0.14 +0.8
5,836,094 - PP_5115 0.14 +0.7
5,836,094 - PP_5115 0.14 -1.0
5,836,094 - PP_5115 0.14 -3.0
5,836,132 - PP_5115 0.17 +0.8
5,836,179 + PP_5115 0.21 +2.7
5,836,180 - PP_5115 0.21 +2.7
5,836,195 + PP_5115 0.22 -3.0
5,836,196 - PP_5115 0.22 +1.5
5,836,280 + PP_5115 0.29 +1.4
5,836,383 + PP_5115 0.37 -2.9
5,836,384 - PP_5115 0.37 +0.8
5,836,391 + PP_5115 0.37 -0.1
5,836,467 + PP_5115 0.43 -1.8
5,836,467 + PP_5115 0.43 -0.1
5,836,468 - PP_5115 0.43 -0.2
5,836,468 - PP_5115 0.43 +0.3
5,836,480 - PP_5115 0.44 -3.0
5,836,529 - PP_5115 0.48 -4.0
5,836,529 - PP_5115 0.48 +0.9
5,836,534 + PP_5115 0.48 -2.7
5,836,672 + PP_5115 0.59 +0.2
5,836,673 - PP_5115 0.59 +1.6
5,836,673 - PP_5115 0.59 +2.0
5,836,685 - PP_5115 0.60 +1.8
5,836,685 - PP_5115 0.60 +1.9
5,836,722 + PP_5115 0.63 -1.1
5,836,761 + PP_5115 0.66 +1.9
5,836,762 - PP_5115 0.66 +1.5
5,836,812 + PP_5115 0.70 +1.5
5,836,812 + PP_5115 0.70 -3.2
5,836,813 - PP_5115 0.70 +2.5
5,836,813 - PP_5115 0.70 -2.7
5,836,827 + PP_5115 0.71 -0.1
5,836,827 + PP_5115 0.71 -2.6
5,836,827 + PP_5115 0.71 +2.6
5,836,827 + PP_5115 0.71 -2.0
5,836,827 + PP_5115 0.71 +1.1
5,836,827 + PP_5115 0.71 +1.8
5,836,827 + PP_5115 0.71 +0.4
5,836,828 - PP_5115 0.71 +0.8
5,836,828 - PP_5115 0.71 -3.9
5,836,828 - PP_5115 0.71 +0.1
5,836,867 - PP_5115 0.74 +1.1
5,837,045 + PP_5115 0.87 +2.5
5,837,045 + PP_5115 0.87 -2.5
5,837,073 - PP_5115 0.90 +1.7
5,837,125 + -2.7
5,837,125 + +0.1
5,837,125 + -1.5
5,837,125 + -2.5
5,837,126 - +0.8
5,837,304 + +2.0
5,837,304 + +0.9
5,837,305 - -2.4
5,837,305 - -2.2
5,837,305 - -2.9
5,837,387 + PP_5116 0.14 -2.2
5,837,388 - PP_5116 0.14 -3.6
5,837,388 - PP_5116 0.14 -2.7
5,837,390 + PP_5116 0.14 +0.7
5,837,390 + PP_5116 0.14 +0.6
5,837,390 + PP_5116 0.14 +1.1
5,837,391 - PP_5116 0.14 -1.0
5,837,425 + PP_5116 0.16 +0.4
5,837,425 + PP_5116 0.16 +2.4
5,837,479 + PP_5116 0.20 +2.5
5,837,479 + PP_5116 0.20 -4.2
5,837,479 + PP_5116 0.20 +1.3
5,837,480 - PP_5116 0.20 +0.1
5,837,480 - PP_5116 0.20 +0.9
5,837,540 + PP_5116 0.25 -1.8
5,837,540 + PP_5116 0.25 -1.2
5,837,540 + PP_5116 0.25 -3.0
5,837,540 + PP_5116 0.25 +2.0
5,837,540 + PP_5116 0.25 +0.6
5,837,540 + PP_5116 0.25 -3.5
5,837,578 - PP_5116 0.28 +1.6
5,837,727 + PP_5116 0.38 +2.0
5,837,727 + PP_5116 0.38 +0.1
5,837,728 - PP_5116 0.39 -3.0
5,837,796 + PP_5116 0.43 -2.0
5,837,796 + PP_5116 0.43 +3.2
5,837,809 - PP_5116 0.44 -3.4
5,837,845 + PP_5116 0.47 +0.5
5,837,846 - PP_5116 0.47 -3.7
5,837,846 - PP_5116 0.47 -4.8
5,837,846 - PP_5116 0.47 -4.1
5,837,846 - PP_5116 0.47 +1.1
5,837,846 - PP_5116 0.47 -2.1
5,837,960 + PP_5116 0.55 +1.8
5,838,051 - PP_5116 0.62 +0.8
5,838,051 - PP_5116 0.62 -3.0
5,838,160 + PP_5116 0.70 +0.6
5,838,161 - PP_5116 0.70 +0.0
5,838,179 + PP_5116 0.71 +0.9
5,838,179 + PP_5116 0.71 -2.4
5,838,179 + PP_5116 0.71 -3.3
5,838,179 + PP_5116 0.71 -2.2
5,838,180 - PP_5116 0.71 -1.5

Or see this region's nucleotide sequence