Strain Fitness in Pseudomonas putida KT2440 around PP_4234

Experiment: NAG (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (N); with MOPS
4,804,060	-		PP_4232	0.61	+0.5
4,804,060	-		PP_4232	0.61	-3.8
4,804,061	+		PP_4232	0.61	-3.1
4,804,061	+		PP_4232	0.61	+0.7
4,804,061	+		PP_4232	0.61	+2.4
4,804,061	+		PP_4232	0.61	+0.4
4,804,061	+		PP_4232	0.61	+0.5
4,804,061	+		PP_4232	0.61	+1.3
4,804,061	+		PP_4232	0.61	-2.1
4,804,061	+		PP_4232	0.61	+0.7
4,804,061	+		PP_4232	0.61	-1.6
4,804,061	+		PP_4232	0.61	+0.6
4,804,061	+		PP_4232	0.61	+2.2
4,804,061	+		PP_4232	0.61	+1.0
4,804,061	+		PP_4232	0.61	+1.1
4,804,061	+		PP_4232	0.61	-2.2
4,804,061	+		PP_4232	0.61	-0.1
4,804,062	-				+0.1
4,804,062	-		PP_4232	0.61	+1.5
4,804,062	-		PP_4232	0.61	+0.9
4,804,062	-		PP_4232	0.61	+0.4
4,804,062	-		PP_4232	0.61	+0.2
4,804,062	-		PP_4232	0.61	+1.7
4,804,146	-		PP_4232	0.68	+1.3
4,804,200	+		PP_4232	0.73	-0.1
4,804,200	+		PP_4232	0.73	+0.4
4,804,200	+		PP_4232	0.73	-0.2
4,804,201	-		PP_4232	0.73	+1.1
4,804,210	-				+1.1
4,804,287	+		PP_4232	0.80	+1.0
4,804,287	+		PP_4232	0.80	+0.5
4,804,288	-		PP_4232	0.80	-0.1
4,804,321	+		PP_4232	0.83	+1.8
4,804,321	+		PP_4232	0.83	+1.7
4,804,321	+		PP_4232	0.83	+0.5
4,804,322	-		PP_4232	0.83	+1.5
4,804,322	-		PP_4232	0.83	-3.1
4,804,332	+		PP_4232	0.84	+0.7
4,804,332	+		PP_4232	0.84	+0.0
4,804,333	-		PP_4232	0.84	+1.7
4,804,333	-		PP_4232	0.84	-2.4
4,804,333	-		PP_4232	0.84	+0.2
4,804,333	-		PP_4232	0.84	+0.4
4,804,375	-		PP_4232	0.87	+1.0
4,804,431	+				-2.7
4,804,431	+				+0.0
4,804,514	-				+2.0
4,804,517	+				+1.8
4,804,517	+				-0.0
4,804,517	+				-2.2
4,804,583	+				-0.2
4,804,583	+				-2.6
4,804,583	+				-0.0
4,804,583	+				+0.8
4,804,584	-				+0.8
4,804,584	-				-0.1
4,804,584	-				-3.2
4,804,584	-				-0.8
4,804,586	+		PP_4233	0.10	+1.2
4,804,586	+		PP_4233	0.10	+1.1
4,804,595	+		PP_4233	0.12	+0.9
4,804,596	-		PP_4233	0.12	-3.1
4,804,596	-		PP_4233	0.12	+1.5
4,804,596	-		PP_4233	0.12	-3.2
4,804,727	+		PP_4233	0.36	+1.5
4,804,727	+		PP_4233	0.36	-2.2
4,804,848	-		PP_4233	0.59	+1.9
4,805,316	+				+0.8
4,805,316	+				+1.2
4,805,499	+		PP_4234	0.16	+0.5
4,805,499	+		PP_4234	0.16	-3.3
4,805,500	-		PP_4234	0.16	-3.6
4,805,500	-		PP_4234	0.16	+1.6
4,805,500	-		PP_4234	0.16	+0.6
4,805,500	-		PP_4234	0.16	-3.0
4,805,502	+		PP_4234	0.16	-3.1
4,805,502	+		PP_4234	0.16	+0.4
4,805,502	+		PP_4234	0.16	-0.4
4,805,502	+		PP_4234	0.16	+0.8
4,805,503	-		PP_4234	0.16	+1.6
4,805,503	-		PP_4234	0.16	+0.6
4,805,503	-		PP_4234	0.16	-2.4
4,805,538	+		PP_4234	0.17	-4.4
4,805,568	+		PP_4234	0.18	-3.0
4,805,620	-		PP_4234	0.20	-0.5
4,805,620	-		PP_4234	0.20	+0.5
4,805,620	-		PP_4234	0.20	-2.7
4,805,949	+		PP_4234	0.31	-0.2
4,805,950	-		PP_4234	0.31	-4.0
4,805,950	-		PP_4234	0.31	-1.1
4,806,045	+		PP_4234	0.35	+1.8
4,806,045	+		PP_4234	0.35	+0.5
4,806,046	-		PP_4234	0.35	-3.5
4,806,046	-		PP_4234	0.35	-2.2
4,806,289	-		PP_4234	0.43	-3.4
4,806,332	-		PP_4234	0.45	-2.5
4,806,538	-		PP_4234	0.52	+1.2
4,806,574	-		PP_4234	0.53	+0.1
4,806,574	-		PP_4234	0.53	+0.3
4,806,576	+		PP_4234	0.54	+0.1
4,806,609	+		PP_4234	0.55	+0.8
4,806,609	+		PP_4234	0.55	-0.8
4,806,609	+		PP_4234	0.55	+1.0
4,806,609	+		PP_4234	0.55	+0.0
4,806,609	+		PP_4234	0.55	+0.4
4,806,610	-		PP_4234	0.55	+2.0
4,806,610	-		PP_4234	0.55	+0.5
4,806,610	-		PP_4234	0.55	+1.5
4,806,610	-		PP_4234	0.55	+1.1
4,806,612	+		PP_4234	0.55	+1.0
4,806,613	-		PP_4234	0.55	-2.3
4,806,613	-		PP_4234	0.55	+1.3
4,806,613	-		PP_4234	0.55	-3.7
4,806,613	-		PP_4234	0.55	+0.4
4,806,613	-		PP_4234	0.55	-3.6
4,806,660	+		PP_4234	0.56	+0.8
4,806,660	+		PP_4234	0.56	+0.4
4,806,660	+		PP_4234	0.56	+1.3
4,806,661	-		PP_4234	0.57	-0.2
4,806,831	+		PP_4234	0.63	+0.6
4,806,832	-		PP_4234	0.63	+1.5
4,806,852	+		PP_4234	0.63	-2.7
4,806,852	+		PP_4234	0.63	+2.3
4,806,852	+		PP_4234	0.63	+1.0
4,806,865	+		PP_4234	0.64	-3.3
4,806,865	+		PP_4234	0.64	+0.2
4,806,865	+		PP_4234	0.64	-0.5
4,806,865	+		PP_4234	0.64	+0.0
4,806,865	+		PP_4234	0.64	+1.4
4,806,886	-		PP_4234	0.64	-1.5
4,806,895	+		PP_4234	0.65	-2.3
4,806,895	+		PP_4234	0.65	+0.9
4,806,898	-		PP_4234	0.65	-1.8
4,806,898	-		PP_4234	0.65	+0.5
4,806,898	-		PP_4234	0.65	+1.4
4,807,026	+		PP_4234	0.69	-4.0
4,807,026	+		PP_4234	0.69	-1.2
4,807,027	-		PP_4234	0.69	+2.2
4,807,314	+		PP_4234	0.80	+1.3
4,807,315	-		PP_4234	0.80	-2.9
4,807,591	-		PP_4234	0.89	-2.6
4,808,030	-				-3.6
4,808,030	-				+1.0
4,808,030	-				-3.2
4,808,031	+				+0.3
4,808,032	-				+0.7
4,808,064	+				-0.5
4,808,064	+				+0.2
4,808,064	+				+1.9
4,808,351	+				-3.4
4,808,351	+				-0.8
4,808,351	+				+0.6
4,808,351	+				-3.3
4,808,352	-				-3.4
4,808,355	-				-0.2
4,808,355	-				+1.9
4,808,394	+				-3.7
4,808,394	+				+1.1
4,808,394	+				+0.3
4,808,395	-				-2.2
4,808,395	-				-2.8
4,808,477	+				-3.3
4,808,590	+				+0.5
4,808,590	+				+1.7
4,808,590	+				-2.5
4,808,614	+				+0.9
4,808,614	+				-3.6
4,808,614	+				-2.5
4,808,614	+				+0.8
4,808,614	+				-1.4
4,808,615	-				+1.8
4,808,615	-				-0.3
4,808,615	-				-2.8
4,808,620	+		PP_4235	0.10	-2.9
4,808,621	-		PP_4235	0.10	-2.2
4,808,621	-		PP_4235	0.10	-2.7
4,808,723	-		PP_4235	0.16	-2.4
4,808,723	-		PP_4235	0.16	-2.2
4,808,744	+		PP_4235	0.17	+0.5
4,808,745	-		PP_4235	0.17	-3.0
4,808,745	-		PP_4235	0.17	-2.8
4,808,745	-		PP_4235	0.17	-1.7