Strain Fitness in Pseudomonas putida KT2440 around PP_4202

Experiment: NAG (N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4201 and PP_4202 are separated by 0 nucleotidesPP_4202 and PP_4203 are separated by 535 nucleotides PP_4201: PP_4201 - Electron transfer flavoprotein subunit alpha, at 4,746,082 to 4,747,011 _4201 PP_4202: PP_4202 - Electron transfer flavoprotein subunit beta, at 4,747,012 to 4,747,761 _4202 PP_4203: PP_4203 - Electron transfer flavoprotein-ubiquinone oxidoreductase, at 4,748,297 to 4,749,979 _4203 Position (kb) 4747 4748Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4746.025 kb on + strandat 4746.026 kb on - strandat 4746.063 kb on + strandat 4746.063 kb on + strandat 4746.063 kb on + strandat 4746.063 kb on + strandat 4746.063 kb on + strandat 4746.064 kb on - strandat 4746.064 kb on - strandat 4746.065 kb on + strandat 4747.788 kb on - strandat 4747.788 kb on - strandat 4747.828 kb on - strandat 4747.949 kb on - strandat 4747.995 kb on - strandat 4747.995 kb on - strandat 4748.003 kb on - strandat 4748.003 kb on - strandat 4748.025 kb on - strandat 4748.025 kb on - strandat 4748.048 kb on - strandat 4748.172 kb on + strandat 4748.172 kb on + strandat 4748.172 kb on + strandat 4748.176 kb on + strandat 4748.176 kb on + strandat 4748.176 kb on + strandat 4748.178 kb on + strandat 4748.178 kb on + strandat 4748.204 kb on + strandat 4748.224 kb on + strandat 4748.224 kb on + strandat 4748.242 kb on + strandat 4748.242 kb on + strandat 4748.242 kb on + strandat 4748.270 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N); with MOPS
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4,746,025 + +1.7
4,746,026 - +2.3
4,746,063 + +2.1
4,746,063 + -2.6
4,746,063 + -0.2
4,746,063 + -2.4
4,746,063 + +0.4
4,746,064 - +0.6
4,746,064 - +0.6
4,746,065 + -3.5
4,747,788 - -3.8
4,747,788 - +1.8
4,747,828 - -0.8
4,747,949 - -2.3
4,747,995 - -0.4
4,747,995 - +0.7
4,748,003 - +1.1
4,748,003 - -3.8
4,748,025 - -0.5
4,748,025 - +1.0
4,748,048 - -3.4
4,748,172 + +1.3
4,748,172 + +1.7
4,748,172 + +0.1
4,748,176 + +0.9
4,748,176 + -4.0
4,748,176 + -0.4
4,748,178 + -1.6
4,748,178 + +0.7
4,748,204 + -3.9
4,748,224 + -1.0
4,748,224 + -1.9
4,748,242 + +1.5
4,748,242 + -0.4
4,748,242 + -3.0
4,748,270 + +1.1

Or see this region's nucleotide sequence