Strain Fitness in Pseudomonas putida KT2440 around PP_0749

Experiment: NAG (N); with MOPS

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0747 and PP_0748 are separated by 2 nucleotidesPP_0748 and PP_0749 are separated by 51 nucleotidesPP_0749 and PP_0750 are separated by 44 nucleotidesPP_0750 and PP_0751 are separated by 176 nucleotides PP_0747: PP_0747 - Hypoxanthine-guanine phosphoribosyltransferase, at 865,988 to 866,545 _0747 PP_0748: PP_0748 - conserved protein of unknown function, at 866,548 to 867,021 _0748 PP_0749: PP_0749 - conserved exported protein of unknown function, at 867,073 to 867,543 _0749 PP_0750: PP_0750 - conserved protein of unknown function, at 867,588 to 867,902 _0750 PP_0751: PP_0751 - malate:quinone oxidoreductase, at 868,079 to 869,587 _0751 Position (kb) 867 868Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 866.201 kb on + strand, within PP_0747at 866.308 kb on + strand, within PP_0747at 866.378 kb on + strand, within PP_0747at 866.378 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.441 kb on + strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.442 kb on - strand, within PP_0747at 866.468 kb on + strand, within PP_0747at 866.468 kb on + strand, within PP_0747at 866.469 kb on - strand, within PP_0747at 866.469 kb on - strand, within PP_0747at 866.469 kb on - strand, within PP_0747at 866.469 kb on - strand, within PP_0747at 866.469 kb on - strand, within PP_0747at 866.470 kb on + strand, within PP_0747at 866.470 kb on + strand, within PP_0747at 866.471 kb on - strand, within PP_0747at 866.471 kb on - strand, within PP_0747at 866.481 kb on - strand, within PP_0747at 866.492 kb on + strandat 866.492 kb on + strandat 866.492 kb on + strandat 866.492 kb on + strandat 866.493 kb on - strandat 866.502 kb on - strandat 866.647 kb on - strand, within PP_0748at 866.695 kb on + strand, within PP_0748at 866.696 kb on - strand, within PP_0748at 866.696 kb on - strand, within PP_0748at 866.857 kb on - strand, within PP_0748at 866.857 kb on - strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strandat 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.860 kb on + strand, within PP_0748at 866.861 kb on - strand, within PP_0748at 866.861 kb on - strand, within PP_0748at 866.861 kb on - strand, within PP_0748at 866.861 kb on - strand, within PP_0748at 866.990 kb on - strandat 867.031 kb on + strandat 867.032 kb on - strandat 867.043 kb on + strandat 867.044 kb on - strandat 867.059 kb on - strandat 867.215 kb on - strand, within PP_0749at 867.215 kb on - strand, within PP_0749at 867.227 kb on + strand, within PP_0749at 867.382 kb on + strand, within PP_0749at 867.382 kb on + strand, within PP_0749at 867.382 kb on + strand, within PP_0749at 867.382 kb on + strand, within PP_0749at 867.382 kb on + strand, within PP_0749at 867.383 kb on - strand, within PP_0749at 867.383 kb on - strand, within PP_0749at 867.383 kb on - strand, within PP_0749at 867.383 kb on - strand, within PP_0749at 867.431 kb on - strand, within PP_0749at 867.534 kb on + strandat 867.534 kb on + strandat 867.535 kb on - strandat 867.535 kb on - strandat 867.535 kb on - strandat 867.535 kb on - strandat 867.617 kb on + strandat 867.617 kb on + strandat 867.634 kb on + strand, within PP_0750at 867.660 kb on + strand, within PP_0750at 867.660 kb on + strandat 867.660 kb on + strand, within PP_0750at 867.661 kb on - strand, within PP_0750at 867.661 kb on - strand, within PP_0750at 867.736 kb on - strand, within PP_0750at 867.773 kb on - strand, within PP_0750at 867.773 kb on - strand, within PP_0750at 867.871 kb on - strandat 867.871 kb on - strandat 867.871 kb on - strandat 867.871 kb on - strandat 867.887 kb on + strandat 867.887 kb on + strandat 867.888 kb on - strandat 867.888 kb on - strandat 868.014 kb on + strandat 868.080 kb on + strandat 868.080 kb on + strandat 868.087 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N); with MOPS
remove
866,201 + PP_0747 0.38 -2.9
866,308 + PP_0747 0.57 -1.7
866,378 + PP_0747 0.70 +0.8
866,378 + PP_0747 0.70 +3.9
866,441 + PP_0747 0.81 -4.1
866,441 + PP_0747 0.81 +0.5
866,441 + PP_0747 0.81 -2.3
866,441 + PP_0747 0.81 -2.5
866,441 + PP_0747 0.81 -3.6
866,441 + PP_0747 0.81 -1.7
866,441 + PP_0747 0.81 -2.0
866,441 + PP_0747 0.81 +1.1
866,441 + PP_0747 0.81 +2.8
866,442 - PP_0747 0.81 +1.7
866,442 - PP_0747 0.81 -3.1
866,442 - PP_0747 0.81 -1.5
866,442 - PP_0747 0.81 +0.9
866,442 - PP_0747 0.81 -0.0
866,442 - PP_0747 0.81 +1.2
866,442 - PP_0747 0.81 -1.4
866,442 - PP_0747 0.81 +0.3
866,442 - PP_0747 0.81 -3.4
866,468 + PP_0747 0.86 +2.1
866,468 + PP_0747 0.86 +0.7
866,469 - PP_0747 0.86 -0.3
866,469 - PP_0747 0.86 +1.1
866,469 - PP_0747 0.86 +1.6
866,469 - PP_0747 0.86 +2.0
866,469 - PP_0747 0.86 -3.1
866,470 + PP_0747 0.86 +0.5
866,470 + PP_0747 0.86 +1.6
866,471 - PP_0747 0.87 -2.6
866,471 - PP_0747 0.87 +1.2
866,481 - PP_0747 0.88 +0.4
866,492 + +0.9
866,492 + +2.3
866,492 + -3.6
866,492 + -2.8
866,493 - +1.6
866,502 - -2.6
866,647 - PP_0748 0.21 -0.1
866,695 + PP_0748 0.31 -1.5
866,696 - PP_0748 0.31 -0.9
866,696 - PP_0748 0.31 +0.7
866,857 - PP_0748 0.65 -0.8
866,857 - PP_0748 0.65 -3.9
866,860 + PP_0748 0.66 -0.6
866,860 + PP_0748 0.66 +0.7
866,860 + PP_0748 0.66 +1.6
866,860 + -0.4
866,860 + PP_0748 0.66 +0.4
866,860 + PP_0748 0.66 +0.3
866,860 + PP_0748 0.66 +1.7
866,860 + PP_0748 0.66 -0.1
866,860 + PP_0748 0.66 +2.0
866,860 + PP_0748 0.66 -3.2
866,861 - PP_0748 0.66 -3.6
866,861 - PP_0748 0.66 +1.1
866,861 - PP_0748 0.66 -3.4
866,861 - PP_0748 0.66 +0.8
866,990 - -3.0
867,031 + +0.1
867,032 - -3.5
867,043 + +1.0
867,044 - -2.9
867,059 - +0.7
867,215 - PP_0749 0.30 -2.2
867,215 - PP_0749 0.30 -3.2
867,227 + PP_0749 0.33 +1.4
867,382 + PP_0749 0.66 +0.3
867,382 + PP_0749 0.66 -2.2
867,382 + PP_0749 0.66 -0.3
867,382 + PP_0749 0.66 -0.3
867,382 + PP_0749 0.66 -0.4
867,383 - PP_0749 0.66 +0.6
867,383 - PP_0749 0.66 +0.3
867,383 - PP_0749 0.66 +0.6
867,383 - PP_0749 0.66 -2.9
867,431 - PP_0749 0.76 -1.6
867,534 + +0.3
867,534 + -2.7
867,535 - +1.6
867,535 - -0.9
867,535 - +2.0
867,535 - +1.9
867,617 + -2.6
867,617 + -3.6
867,634 + PP_0750 0.15 +1.4
867,660 + PP_0750 0.23 -0.7
867,660 + +1.7
867,660 + PP_0750 0.23 -1.5
867,661 - PP_0750 0.23 -2.5
867,661 - PP_0750 0.23 -0.1
867,736 - PP_0750 0.47 -2.9
867,773 - PP_0750 0.59 +0.5
867,773 - PP_0750 0.59 +0.8
867,871 - +0.5
867,871 - -1.4
867,871 - -3.0
867,871 - -2.8
867,887 + +0.1
867,887 + -3.9
867,888 - +0.6
867,888 - +0.4
868,014 + +1.2
868,080 + +2.0
868,080 + +1.7
868,087 - -2.4

Or see this region's nucleotide sequence