Experiment: NAG (N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5131 and PP_5132 are separated by 131 nucleotides PP_5132 and PP_5133 are separated by 54 nucleotides PP_5133 and PP_5134 overlap by 14 nucleotides
PP_5131: PP_5131 - sodium-cystine symporter, at 5,853,981 to 5,855,372
_5131
PP_5132: PP_5132 - dihydrofolate reductase, at 5,855,504 to 5,856,019
_5132
PP_5133: PP_5133 - conserved membrane protein of unknown function, at 5,856,074 to 5,857,465
_5133
PP_5134: PP_5134 - conserved protein of unknown function, at 5,857,452 to 5,858,822
_5134
Position (kb) 5856
5857
5858 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5855.457 kb on - strand at 5856.014 kb on - strand at 5856.014 kb on - strand at 5856.014 kb on - strand at 5856.014 kb on - strand at 5856.032 kb on - strand at 5856.199 kb on - strand at 5856.199 kb on - strand at 5856.199 kb on - strand at 5856.435 kb on + strand, within PP_5133 at 5856.435 kb on + strand, within PP_5133 at 5856.435 kb on + strand, within PP_5133 at 5856.436 kb on - strand, within PP_5133 at 5856.436 kb on - strand, within PP_5133 at 5856.508 kb on - strand, within PP_5133 at 5856.612 kb on + strand, within PP_5133 at 5856.657 kb on + strand, within PP_5133 at 5856.657 kb on + strand, within PP_5133 at 5856.657 kb on + strand, within PP_5133 at 5856.658 kb on - strand, within PP_5133 at 5856.658 kb on - strand, within PP_5133 at 5856.881 kb on + strand, within PP_5133 at 5856.882 kb on - strand, within PP_5133 at 5856.882 kb on - strand, within PP_5133 at 5856.882 kb on - strand, within PP_5133 at 5856.978 kb on - strand, within PP_5133 at 5857.327 kb on + strand at 5857.493 kb on + strand at 5857.493 kb on + strand at 5857.493 kb on + strand at 5857.494 kb on - strand at 5857.494 kb on - strand at 5857.517 kb on - strand at 5857.574 kb on + strand at 5857.574 kb on + strand at 5857.574 kb on + strand at 5857.575 kb on - strand at 5857.633 kb on - strand, within PP_5134 at 5857.633 kb on - strand, within PP_5134 at 5857.783 kb on + strand, within PP_5134 at 5857.783 kb on + strand, within PP_5134 at 5857.783 kb on + strand, within PP_5134 at 5857.784 kb on - strand, within PP_5134 at 5857.784 kb on - strand, within PP_5134 at 5857.818 kb on + strand, within PP_5134 at 5857.818 kb on + strand, within PP_5134 at 5857.819 kb on - strand, within PP_5134 at 5857.987 kb on + strand, within PP_5134 at 5857.987 kb on + strand, within PP_5134 at 5858.035 kb on - strand, within PP_5134 at 5858.239 kb on + strand, within PP_5134 at 5858.239 kb on + strand, within PP_5134 at 5858.239 kb on + strand, within PP_5134 at 5858.240 kb on - strand, within PP_5134 at 5858.240 kb on - strand, within PP_5134 at 5858.240 kb on - strand, within PP_5134 at 5858.283 kb on + strand, within PP_5134 at 5858.284 kb on - strand, within PP_5134 at 5858.457 kb on - strand, within PP_5134
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N); with MOPS remove 5,855,457 - +1.5 5,856,014 - +2.3 5,856,014 - +0.4 5,856,014 - -3.1 5,856,014 - -0.9 5,856,032 - +1.8 5,856,199 - +0.3 5,856,199 - +1.4 5,856,199 - +0.8 5,856,435 + PP_5133 0.26 +1.2 5,856,435 + PP_5133 0.26 -3.1 5,856,435 + PP_5133 0.26 -2.4 5,856,436 - PP_5133 0.26 -1.2 5,856,436 - PP_5133 0.26 -3.0 5,856,508 - PP_5133 0.31 +1.4 5,856,612 + PP_5133 0.39 -3.0 5,856,657 + PP_5133 0.42 +0.9 5,856,657 + PP_5133 0.42 -1.2 5,856,657 + PP_5133 0.42 -2.5 5,856,658 - PP_5133 0.42 +0.6 5,856,658 - PP_5133 0.42 -3.7 5,856,881 + PP_5133 0.58 -3.0 5,856,882 - PP_5133 0.58 -2.2 5,856,882 - PP_5133 0.58 -2.9 5,856,882 - PP_5133 0.58 +0.9 5,856,978 - PP_5133 0.65 -0.6 5,857,327 + -0.7 5,857,493 + -3.1 5,857,493 + -1.0 5,857,493 + +2.8 5,857,494 - -2.8 5,857,494 - -0.0 5,857,517 - -2.9 5,857,574 + -1.3 5,857,574 + -1.4 5,857,574 + +1.5 5,857,575 - -3.9 5,857,633 - PP_5134 0.13 -2.6 5,857,633 - PP_5134 0.13 -3.7 5,857,783 + PP_5134 0.24 -3.2 5,857,783 + PP_5134 0.24 +0.4 5,857,783 + PP_5134 0.24 +1.7 5,857,784 - PP_5134 0.24 +0.5 5,857,784 - PP_5134 0.24 -3.4 5,857,818 + PP_5134 0.27 -0.9 5,857,818 + PP_5134 0.27 +0.5 5,857,819 - PP_5134 0.27 -0.1 5,857,987 + PP_5134 0.39 -1.7 5,857,987 + PP_5134 0.39 -2.6 5,858,035 - PP_5134 0.43 -2.2 5,858,239 + PP_5134 0.57 +0.9 5,858,239 + PP_5134 0.57 +1.5 5,858,239 + PP_5134 0.57 -3.4 5,858,240 - PP_5134 0.57 -3.7 5,858,240 - PP_5134 0.57 +0.9 5,858,240 - PP_5134 0.57 -1.6 5,858,283 + PP_5134 0.61 +2.1 5,858,284 - PP_5134 0.61 -2.0 5,858,457 - PP_5134 0.73 -0.6
Or see this region's nucleotide sequence