Experiment: NAG (N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0582 and PP_0583 are separated by 89 nucleotides PP_0583 and PP_0584 are separated by 68 nucleotides
PP_0582: PP_0582 - Thiolase family protein, at 679,114 to 680,391
_0582
PP_0583: PP_0583 - Transcriptional regulator, AraC family, at 680,481 to 681,260
_0583
PP_0584: PP_0584 - Methyl-accepting chemotaxis transducer, at 681,329 to 683,272
_0584
Position (kb) 680
681
682 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 679.515 kb on + strand, within PP_0582 at 679.515 kb on + strand, within PP_0582 at 679.515 kb on + strand, within PP_0582 at 679.515 kb on + strand, within PP_0582 at 679.516 kb on - strand, within PP_0582 at 679.517 kb on + strand, within PP_0582 at 679.517 kb on + strand, within PP_0582 at 679.517 kb on + strand, within PP_0582 at 679.517 kb on + strand, within PP_0582 at 679.517 kb on + strand, within PP_0582 at 679.517 kb on + strand, within PP_0582 at 679.517 kb on + strand, within PP_0582 at 679.517 kb on + strand, within PP_0582 at 679.517 kb on + strand, within PP_0582 at 679.517 kb on + strand, within PP_0582 at 679.518 kb on - strand, within PP_0582 at 679.518 kb on - strand, within PP_0582 at 679.518 kb on - strand, within PP_0582 at 679.518 kb on - strand, within PP_0582 at 679.518 kb on - strand, within PP_0582 at 679.518 kb on - strand, within PP_0582 at 679.518 kb on - strand, within PP_0582 at 679.518 kb on - strand, within PP_0582 at 679.518 kb on - strand, within PP_0582 at 679.518 kb on - strand, within PP_0582 at 679.518 kb on - strand, within PP_0582 at 679.614 kb on + strand, within PP_0582 at 679.714 kb on - strand, within PP_0582 at 679.714 kb on - strand, within PP_0582 at 679.739 kb on - strand, within PP_0582 at 679.884 kb on + strand, within PP_0582 at 679.885 kb on - strand, within PP_0582 at 679.972 kb on + strand, within PP_0582 at 679.973 kb on - strand, within PP_0582 at 680.045 kb on - strand, within PP_0582 at 680.098 kb on + strand, within PP_0582 at 680.101 kb on + strand, within PP_0582 at 680.102 kb on - strand, within PP_0582 at 680.102 kb on - strand, within PP_0582 at 680.102 kb on - strand, within PP_0582 at 680.167 kb on + strand, within PP_0582 at 680.168 kb on - strand, within PP_0582 at 680.394 kb on + strand at 680.395 kb on - strand at 680.447 kb on + strand at 680.447 kb on + strand at 680.448 kb on - strand at 680.467 kb on + strand at 680.541 kb on + strand at 680.614 kb on - strand, within PP_0583 at 680.629 kb on + strand, within PP_0583 at 680.630 kb on - strand, within PP_0583 at 680.640 kb on + strand, within PP_0583 at 680.641 kb on - strand, within PP_0583 at 680.641 kb on - strand, within PP_0583 at 680.641 kb on - strand, within PP_0583 at 680.641 kb on - strand, within PP_0583 at 680.641 kb on - strand, within PP_0583 at 680.658 kb on + strand, within PP_0583 at 680.659 kb on - strand, within PP_0583 at 681.186 kb on + strand at 681.186 kb on + strand at 681.187 kb on - strand at 681.205 kb on - strand at 681.205 kb on - strand at 681.226 kb on + strand at 681.227 kb on - strand at 681.227 kb on - strand at 681.227 kb on - strand at 681.356 kb on - strand at 681.697 kb on + strand, within PP_0584 at 681.697 kb on + strand, within PP_0584 at 681.924 kb on - strand, within PP_0584
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N); with MOPS remove 679,515 + PP_0582 0.31 +0.7 679,515 + PP_0582 0.31 +0.1 679,515 + PP_0582 0.31 +1.0 679,515 + PP_0582 0.31 -0.8 679,516 - PP_0582 0.31 -1.8 679,517 + PP_0582 0.32 +0.6 679,517 + PP_0582 0.32 +1.2 679,517 + PP_0582 0.32 +0.2 679,517 + PP_0582 0.32 -3.9 679,517 + PP_0582 0.32 +2.0 679,517 + PP_0582 0.32 -3.5 679,517 + PP_0582 0.32 -0.6 679,517 + PP_0582 0.32 -2.5 679,517 + PP_0582 0.32 +1.6 679,517 + PP_0582 0.32 -2.2 679,518 - PP_0582 0.32 +0.4 679,518 - PP_0582 0.32 -0.3 679,518 - PP_0582 0.32 +1.3 679,518 - PP_0582 0.32 +1.8 679,518 - PP_0582 0.32 +3.1 679,518 - PP_0582 0.32 +0.6 679,518 - PP_0582 0.32 +0.6 679,518 - PP_0582 0.32 +0.8 679,518 - PP_0582 0.32 -3.6 679,518 - PP_0582 0.32 -4.1 679,518 - PP_0582 0.32 +1.9 679,614 + PP_0582 0.39 -3.1 679,714 - PP_0582 0.47 -4.0 679,714 - PP_0582 0.47 -1.9 679,739 - PP_0582 0.49 +0.9 679,884 + PP_0582 0.60 -3.5 679,885 - PP_0582 0.60 +1.8 679,972 + PP_0582 0.67 +1.5 679,973 - PP_0582 0.67 +0.2 680,045 - PP_0582 0.73 +0.4 680,098 + PP_0582 0.77 +1.3 680,101 + PP_0582 0.77 -0.2 680,102 - PP_0582 0.77 -0.0 680,102 - PP_0582 0.77 +1.2 680,102 - PP_0582 0.77 +1.4 680,167 + PP_0582 0.82 -2.5 680,168 - PP_0582 0.82 -1.9 680,394 + +0.6 680,395 - +0.1 680,447 + +0.4 680,447 + +0.4 680,448 - +1.7 680,467 + -4.0 680,541 + -1.8 680,614 - PP_0583 0.17 +1.1 680,629 + PP_0583 0.19 +0.8 680,630 - PP_0583 0.19 +0.3 680,640 + PP_0583 0.20 +0.0 680,641 - PP_0583 0.21 +1.3 680,641 - PP_0583 0.21 +1.7 680,641 - PP_0583 0.21 +1.3 680,641 - PP_0583 0.21 +1.2 680,641 - PP_0583 0.21 +0.5 680,658 + PP_0583 0.23 +1.4 680,659 - PP_0583 0.23 +0.7 681,186 + +1.1 681,186 + +1.7 681,187 - +1.2 681,205 - -3.7 681,205 - +0.1 681,226 + -0.9 681,227 - +1.0 681,227 - +0.3 681,227 - -3.0 681,356 - -3.4 681,697 + PP_0584 0.19 +0.0 681,697 + PP_0584 0.19 +0.4 681,924 - PP_0584 0.31 +1.1
Or see this region's nucleotide sequence