Strain Fitness in Pseudomonas putida KT2440 around PP_2964

Experiment: Ammonium chloride (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N); with MOPS
3,365,725	-		PP_2962	0.39	-0.5
3,365,771	-		PP_2962	0.44	-3.7
3,365,858	+				-1.6
3,365,859	-		PP_2962	0.52	+0.6
3,365,883	+		PP_2962	0.55	+1.4
3,365,884	-		PP_2962	0.55	-3.2
3,365,937	+		PP_2962	0.60	+0.0
3,365,937	+		PP_2962	0.60	-2.2
3,365,937	+		PP_2962	0.60	-2.0
3,365,945	+		PP_2962	0.61	+0.4
3,365,945	+		PP_2962	0.61	+0.7
3,365,945	+		PP_2962	0.61	+0.3
3,365,946	-		PP_2962	0.61	-1.4
3,365,946	-		PP_2962	0.61	+0.3
3,365,946	-		PP_2962	0.61	+1.4
3,365,946	-		PP_2962	0.61	-1.3
3,365,957	+		PP_2962	0.62	+0.2
3,365,957	+		PP_2962	0.62	+0.2
3,365,957	+		PP_2962	0.62	-0.4
3,365,958	-		PP_2962	0.62	-0.4
3,365,958	-		PP_2962	0.62	+0.8
3,365,958	-		PP_2962	0.62	-0.3
3,365,959	+		PP_2962	0.62	-2.1
3,365,959	+		PP_2962	0.62	+0.3
3,365,959	+				-0.2
3,365,959	+		PP_2962	0.62	+0.9
3,365,960	-		PP_2962	0.63	+0.2
3,365,960	-		PP_2962	0.63	+0.1
3,365,987	+		PP_2962	0.65	+0.5
3,365,987	+		PP_2962	0.65	-0.4
3,366,034	-		PP_2962	0.70	-0.5
3,366,034	-		PP_2962	0.70	+0.2
3,366,041	+		PP_2962	0.71	-2.3
3,366,041	+		PP_2962	0.71	-0.6
3,366,042	-		PP_2962	0.71	+1.5
3,366,042	-		PP_2962	0.71	-0.6
3,366,043	+		PP_2962	0.71	-0.6
3,366,043	+		PP_2962	0.71	+0.3
3,366,054	+		PP_2962	0.72	-0.9
3,366,097	-		PP_2962	0.76	-1.4
3,366,117	-		PP_2962	0.78	+0.5
3,366,126	+		PP_2962	0.79	+0.8
3,366,126	+				+3.0
3,366,127	-		PP_2962	0.79	+1.6
3,366,131	-		PP_2962	0.80	-0.1
3,366,179	-		PP_2962	0.84	-0.5
3,366,324	+				-0.9
3,366,325	-				+0.9
3,366,325	-				+0.6
3,366,325	-				-0.1
3,366,325	-				+1.1
3,366,347	+				-2.9
3,366,347	+				-1.6
3,366,347	+				-2.3
3,366,348	-				-0.3
3,366,348	-				+0.6
3,366,348	-				-0.5
3,366,348	-				-0.9
3,366,351	+				-3.8
3,366,352	-				+0.7
3,366,352	-				-0.7
3,366,352	-				+1.1
3,366,358	-				+1.1
3,366,358	-				+0.5
3,366,497	-				+0.1
3,366,666	+				-0.5
3,366,667	-				-1.7
3,366,728	+				+1.8
3,366,729	-				+0.8
3,366,729	-				+0.2
3,366,729	-				+1.1
3,366,729	-				-0.9
3,366,734	-				+1.0
3,366,734	-				+1.6
3,366,734	-				-0.3
3,366,776	+				+0.3
3,366,776	+				+1.0
3,366,776	+				-0.3
3,366,777	-				+0.2
3,366,777	-				+1.9
3,366,859	-				-0.0
3,366,859	-				+0.7
3,366,859	-				+0.5
3,366,882	-				-0.9
3,366,957	+				-3.3
3,366,970	+				-0.2
3,366,970	+				+0.4
3,366,970	+				+0.5
3,366,971	-				+0.0
3,366,971	-				+1.2
3,366,989	+				+0.8
3,367,027	+		PP_2964	0.11	-0.3
3,367,038	-		PP_2964	0.11	-0.8
3,367,038	-		PP_2964	0.11	-0.0
3,367,152	-		PP_2964	0.15	+1.1
3,367,219	+				+1.0
3,367,231	-		PP_2964	0.18	-0.6
3,367,262	+		PP_2964	0.19	-1.2
3,367,262	+		PP_2964	0.19	+0.4
3,367,262	+		PP_2964	0.19	-0.3
3,367,263	-		PP_2964	0.19	+0.3
3,367,263	-		PP_2964	0.19	+0.2
3,367,536	+		PP_2964	0.28	+0.1
3,367,536	+		PP_2964	0.28	-2.8
3,367,536	+		PP_2964	0.28	+0.4
3,367,537	-		PP_2964	0.28	-0.2
3,367,537	-		PP_2964	0.28	-0.4
3,367,537	-		PP_2964	0.28	-0.5
3,367,537	-		PP_2964	0.28	-0.5
3,367,537	-		PP_2964	0.28	-1.4
3,367,538	+		PP_2964	0.28	+1.5
3,367,538	+		PP_2964	0.28	+0.2
3,367,538	+		PP_2964	0.28	-0.9
3,367,538	+		PP_2964	0.28	-2.9
3,367,539	-		PP_2964	0.28	-0.3
3,367,748	+		PP_2964	0.35	-2.7
3,367,748	+		PP_2964	0.35	+0.1
3,367,816	+		PP_2964	0.37	-0.5
3,367,817	-		PP_2964	0.37	-0.6
3,367,819	+		PP_2964	0.37	+1.0
3,367,819	+		PP_2964	0.37	+0.7
3,367,819	+		PP_2964	0.37	-1.0
3,367,819	+		PP_2964	0.37	+0.2
3,367,820	-		PP_2964	0.37	+0.1
3,367,820	-		PP_2964	0.37	-1.5
3,367,820	-		PP_2964	0.37	+0.9
3,367,820	-		PP_2964	0.37	+0.9
3,367,820	-		PP_2964	0.37	-0.6
3,367,823	+				+0.4
3,367,824	-		PP_2964	0.37	-1.0
3,367,824	-		PP_2964	0.37	-0.3
3,367,962	+		PP_2964	0.42	-0.6
3,367,962	+		PP_2964	0.42	+0.8
3,367,963	-		PP_2964	0.42	+0.7
3,368,130	+		PP_2964	0.48	-4.1
3,368,130	+		PP_2964	0.48	+1.1
3,368,130	+		PP_2964	0.48	+2.3
3,368,131	-		PP_2964	0.48	-0.6
3,368,131	-		PP_2964	0.48	-0.3
3,368,131	-		PP_2964	0.48	+0.9
3,368,172	+		PP_2964	0.49	-2.9
3,368,326	-		PP_2964	0.54	-0.0
3,368,413	+		PP_2964	0.57	+0.1
3,368,413	+		PP_2964	0.57	-1.3
3,368,414	-		PP_2964	0.57	-0.6
3,368,446	+		PP_2964	0.58	-1.6
3,368,446	+		PP_2964	0.58	+1.2
3,368,575	-		PP_2964	0.62	-0.0
3,368,633	+		PP_2964	0.64	-1.0
3,368,634	-		PP_2964	0.64	+0.4
3,368,635	+		PP_2964	0.64	+0.2
3,368,636	-		PP_2964	0.64	-2.4
3,368,636	-		PP_2964	0.64	+0.1
3,368,699	+		PP_2964	0.66	-0.5
3,368,700	-		PP_2964	0.67	-1.2
3,368,700	-		PP_2964	0.67	-0.1
3,368,774	+		PP_2964	0.69	-0.1
3,368,774	+				+1.0
3,368,774	+		PP_2964	0.69	-0.7
3,368,775	-		PP_2964	0.69	+0.1
3,368,855	+				-0.6
3,368,856	-		PP_2964	0.72	+0.5
3,368,906	+		PP_2964	0.73	-0.6
3,368,906	+		PP_2964	0.73	-0.5
3,368,906	+		PP_2964	0.73	+0.1
3,368,907	-		PP_2964	0.73	-0.1
3,368,960	+		PP_2964	0.75	-2.3
3,368,961	-				-0.9
3,369,086	+		PP_2964	0.79	-0.6
3,369,087	-		PP_2964	0.79	-0.4
3,369,087	-		PP_2964	0.79	+1.1
3,369,094	+		PP_2964	0.80	-0.9
3,369,094	+		PP_2964	0.80	+0.7
3,369,094	+		PP_2964	0.80	+0.6
3,369,095	-		PP_2964	0.80	-0.7
3,369,095	-		PP_2964	0.80	+0.8
3,369,095	-		PP_2964	0.80	+0.0
3,369,228	-		PP_2964	0.84	-0.4
3,369,228	-		PP_2964	0.84	-2.2
3,369,248	+		PP_2964	0.85	+0.0
3,369,249	-		PP_2964	0.85	-0.1
3,369,283	+		PP_2964	0.86	+0.4
3,369,362	+		PP_2964	0.88	+0.5
3,369,362	+		PP_2964	0.88	+0.0
3,369,362	+		PP_2964	0.88	-1.1
3,369,363	-		PP_2964	0.88	+0.5
3,369,447	-				-0.5
3,369,447	-				+0.7
3,369,511	+				-1.6
3,369,512	-				+0.9
3,369,619	+				+0.9
3,369,620	-				+0.2
3,369,708	-				+0.4
3,369,758	-		PP_2965	0.11	+0.6
3,369,776	+		PP_2965	0.16	+0.4
3,369,776	+		PP_2965	0.16	-3.6
3,369,776	+		PP_2965	0.16	+0.6
3,369,777	-		PP_2965	0.16	+0.9
3,369,777	-		PP_2965	0.16	+0.4
3,369,860	+		PP_2965	0.39	+0.9
3,369,861	-		PP_2965	0.39	+1.1
3,369,903	-		PP_2965	0.51	+0.3
3,369,923	+		PP_2965	0.56	-1.2
3,369,923	+		PP_2965	0.56	-0.0
3,369,924	-		PP_2965	0.57	-1.0
3,369,944	+		PP_2965	0.62	-0.3
3,369,944	+		PP_2965	0.62	-0.1
3,369,944	+		PP_2965	0.62	+1.3
3,369,945	-		PP_2965	0.63	-0.5
3,369,945	-		PP_2965	0.63	+0.8
3,369,945	-		PP_2965	0.63	-0.0
3,369,945	-		PP_2965	0.63	+0.3
3,369,948	+		PP_2965	0.63	-0.9
3,369,948	+		PP_2965	0.63	-3.6
3,369,948	+		PP_2965	0.63	-1.1
3,370,040	+		PP_2965	0.89	-0.6
3,370,040	+		PP_2965	0.89	-0.1
3,370,059	-				-3.3
3,370,079	-				+1.2
3,370,098	+				-0.7
3,370,098	+				-0.1
3,370,098	+				+1.4
3,370,099	-				-3.1
3,370,099	-				-0.3
3,370,099	-				+1.2
3,370,100	+				-1.7
3,370,100	+				+1.1
3,370,105	+				-1.0
3,370,106	-				+1.0
3,370,106	-				-0.7
3,370,106	-				+1.0
3,370,146	-				-0.7
3,370,170	+				+0.6
3,370,170	+				-0.3
3,370,170	+				+0.2
3,370,260	-				-0.3
3,370,271	+				-0.8
3,370,272	-				+1.8
3,370,307	+				+0.2
3,370,327	+				+0.4
3,370,327	+				+2.3
3,370,327	+				+0.5
3,370,327	+				-0.7
3,370,328	-				+1.0
3,370,328	-				+1.2
3,370,330	+				+1.5
3,370,330	+				-0.5
3,370,330	+				-0.8
3,370,330	+				+0.3
3,370,331	-				-0.2
3,370,331	-				-1.6
3,370,331	-				+0.2
3,370,331	-				+0.5
3,370,331	-				-1.3
3,370,331	-				-0.4
3,370,331	-				+0.8
3,370,331	-				+0.2
3,370,331	-				-1.2
3,370,334	+				+0.1
3,370,335	-				-1.0
3,370,335	-				-0.2
3,370,375	-				-0.4
3,370,375	-				-0.1
3,370,474	-				+1.4
3,370,481	+				-0.3
3,370,482	-				-0.2
3,370,482	-				+0.1
3,370,525	-				+0.4
3,370,617	+				-0.9
3,370,626	-				-1.8
3,370,678	+				+1.2
3,370,701	+				-2.7
3,370,701	+				+0.8
3,370,701	+				-4.0