Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02140 and PS417_02145 are separated by 48 nucleotides PS417_02145 and PS417_02150 are separated by 50 nucleotides
PS417_02140: PS417_02140 - hypothetical protein, at 475,709 to 477,172
_02140
PS417_02145: PS417_02145 - potassium transporter KefA, at 477,221 to 480,559
_02145
PS417_02150: PS417_02150 - potassium/proton antiporter, at 480,610 to 482,352
_02150
Position (kb) 477
478
479
480
481 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 476.449 kb on - strand, within PS417_02140 at 476.556 kb on - strand, within PS417_02140 at 476.598 kb on + strand, within PS417_02140 at 476.598 kb on + strand, within PS417_02140 at 476.601 kb on + strand, within PS417_02140 at 476.602 kb on - strand, within PS417_02140 at 476.602 kb on - strand, within PS417_02140 at 476.607 kb on + strand, within PS417_02140 at 476.607 kb on + strand, within PS417_02140 at 476.843 kb on + strand, within PS417_02140 at 476.944 kb on - strand, within PS417_02140 at 477.214 kb on - strand at 477.304 kb on - strand at 477.331 kb on - strand at 477.389 kb on - strand at 477.489 kb on + strand at 477.489 kb on + strand at 477.490 kb on - strand at 477.490 kb on - strand at 477.490 kb on - strand at 477.490 kb on - strand at 477.939 kb on + strand, within PS417_02145 at 477.939 kb on + strand, within PS417_02145 at 477.939 kb on + strand, within PS417_02145 at 477.940 kb on - strand, within PS417_02145 at 477.940 kb on - strand, within PS417_02145 at 477.940 kb on - strand, within PS417_02145 at 477.964 kb on - strand, within PS417_02145 at 478.106 kb on - strand, within PS417_02145 at 478.128 kb on + strand, within PS417_02145 at 478.128 kb on + strand, within PS417_02145 at 478.128 kb on + strand, within PS417_02145 at 478.129 kb on - strand, within PS417_02145 at 478.191 kb on + strand, within PS417_02145 at 478.191 kb on + strand, within PS417_02145 at 478.419 kb on + strand, within PS417_02145 at 478.809 kb on + strand, within PS417_02145 at 479.025 kb on + strand, within PS417_02145 at 479.110 kb on - strand, within PS417_02145 at 479.110 kb on - strand, within PS417_02145 at 479.436 kb on + strand, within PS417_02145 at 479.436 kb on + strand, within PS417_02145 at 479.437 kb on - strand, within PS417_02145 at 479.488 kb on - strand, within PS417_02145 at 479.561 kb on - strand, within PS417_02145 at 479.562 kb on + strand, within PS417_02145 at 479.562 kb on + strand, within PS417_02145 at 479.712 kb on + strand, within PS417_02145 at 479.713 kb on - strand, within PS417_02145 at 479.891 kb on + strand, within PS417_02145 at 479.891 kb on + strand, within PS417_02145 at 479.891 kb on + strand, within PS417_02145 at 479.892 kb on - strand, within PS417_02145 at 480.373 kb on - strand at 480.373 kb on - strand at 480.373 kb on - strand at 480.554 kb on - strand at 480.559 kb on + strand at 480.559 kb on + strand at 480.611 kb on + strand at 480.982 kb on - strand, within PS417_02150 at 481.265 kb on + strand, within PS417_02150 at 481.266 kb on - strand, within PS417_02150 at 481.350 kb on + strand, within PS417_02150 at 481.471 kb on + strand, within PS417_02150 at 481.472 kb on - strand, within PS417_02150 at 481.513 kb on - strand, within PS417_02150 at 481.513 kb on - strand, within PS417_02150 at 481.548 kb on + strand, within PS417_02150 at 481.549 kb on - strand, within PS417_02150
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 476,449 - PS417_02140 0.51 +1.2 476,556 - PS417_02140 0.58 -0.5 476,598 + PS417_02140 0.61 +0.4 476,598 + PS417_02140 0.61 -1.1 476,601 + PS417_02140 0.61 +0.8 476,602 - PS417_02140 0.61 +0.2 476,602 - PS417_02140 0.61 -0.4 476,607 + PS417_02140 0.61 -1.4 476,607 + PS417_02140 0.61 -0.4 476,843 + PS417_02140 0.77 +0.9 476,944 - PS417_02140 0.84 +0.0 477,214 - -0.5 477,304 - -0.2 477,331 - -2.4 477,389 - -0.8 477,489 + +0.6 477,489 + -0.2 477,490 - -0.7 477,490 - +1.8 477,490 - -0.5 477,490 - -0.8 477,939 + PS417_02145 0.22 +2.8 477,939 + PS417_02145 0.22 +0.1 477,939 + PS417_02145 0.22 +0.7 477,940 - PS417_02145 0.22 +0.6 477,940 - PS417_02145 0.22 +0.2 477,940 - PS417_02145 0.22 +0.5 477,964 - PS417_02145 0.22 -0.2 478,106 - PS417_02145 0.27 +0.4 478,128 + PS417_02145 0.27 +0.1 478,128 + PS417_02145 0.27 -0.6 478,128 + PS417_02145 0.27 -1.0 478,129 - PS417_02145 0.27 -0.6 478,191 + PS417_02145 0.29 +3.3 478,191 + PS417_02145 0.29 -1.8 478,419 + PS417_02145 0.36 -0.8 478,809 + PS417_02145 0.48 +0.9 479,025 + PS417_02145 0.54 +1.0 479,110 - PS417_02145 0.57 +1.4 479,110 - PS417_02145 0.57 +1.1 479,436 + PS417_02145 0.66 +2.9 479,436 + PS417_02145 0.66 +0.4 479,437 - PS417_02145 0.66 +0.2 479,488 - PS417_02145 0.68 -0.1 479,561 - PS417_02145 0.70 -1.8 479,562 + PS417_02145 0.70 +0.4 479,562 + PS417_02145 0.70 +0.1 479,712 + PS417_02145 0.75 +0.4 479,713 - PS417_02145 0.75 +0.8 479,891 + PS417_02145 0.80 -1.2 479,891 + PS417_02145 0.80 +4.3 479,891 + PS417_02145 0.80 -0.3 479,892 - PS417_02145 0.80 -0.4 480,373 - +1.2 480,373 - +0.1 480,373 - +0.3 480,554 - -0.2 480,559 + +0.0 480,559 + -0.5 480,611 + +0.2 480,982 - PS417_02150 0.21 -0.1 481,265 + PS417_02150 0.38 -0.3 481,266 - PS417_02150 0.38 -1.1 481,350 + PS417_02150 0.42 -1.6 481,471 + PS417_02150 0.49 +0.8 481,472 - PS417_02150 0.49 -0.6 481,513 - PS417_02150 0.52 -0.4 481,513 - PS417_02150 0.52 -0.4 481,548 + PS417_02150 0.54 -0.4 481,549 - PS417_02150 0.54 +0.3
Or see this region's nucleotide sequence