Strain Fitness in Pseudomonas simiae WCS417 around PS417_18915

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18910 and PS417_18915 overlap by 4 nucleotidesPS417_18915 and PS417_18920 are separated by 9 nucleotidesPS417_18920 and PS417_18925 are separated by 54 nucleotides PS417_18910: PS417_18910 - acetylornithine deacetylase, at 4,095,905 to 4,097,062 _18910 PS417_18915: PS417_18915 - hypothetical protein, at 4,097,059 to 4,097,733 _18915 PS417_18920: PS417_18920 - hypothetical protein, at 4,097,743 to 4,098,474 _18920 PS417_18925: PS417_18925 - flagellar motor switch protein FliY, at 4,098,529 to 4,099,359 _18925 Position (kb) 4097 4098Strain fitness (log2 ratio) -1 0 1at 4096.494 kb on + strand, within PS417_18910at 4096.494 kb on + strand, within PS417_18910at 4096.671 kb on + strand, within PS417_18910at 4096.750 kb on - strand, within PS417_18910at 4096.750 kb on - strand, within PS417_18910at 4096.779 kb on + strand, within PS417_18910at 4096.936 kb on - strand, within PS417_18910at 4096.971 kb on + strandat 4096.972 kb on - strandat 4097.124 kb on - strandat 4097.385 kb on + strand, within PS417_18915at 4097.386 kb on - strand, within PS417_18915at 4097.821 kb on - strand, within PS417_18920at 4097.821 kb on - strand, within PS417_18920at 4098.127 kb on - strand, within PS417_18920at 4098.310 kb on - strand, within PS417_18920at 4098.530 kb on + strandat 4098.531 kb on - strandat 4098.581 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,096,494 + PS417_18910 0.51 -0.8
4,096,494 + PS417_18910 0.51 +0.7
4,096,671 + PS417_18910 0.66 -1.6
4,096,750 - PS417_18910 0.73 -1.2
4,096,750 - PS417_18910 0.73 +0.2
4,096,779 + PS417_18910 0.75 +0.3
4,096,936 - PS417_18910 0.89 -0.2
4,096,971 + +1.1
4,096,972 - -1.1
4,097,124 - +1.4
4,097,385 + PS417_18915 0.48 +0.4
4,097,386 - PS417_18915 0.48 +0.5
4,097,821 - PS417_18920 0.11 -1.0
4,097,821 - PS417_18920 0.11 -0.7
4,098,127 - PS417_18920 0.52 -0.7
4,098,310 - PS417_18920 0.77 +0.2
4,098,530 + -1.2
4,098,531 - -0.5
4,098,581 + -0.2

Or see this region's nucleotide sequence