Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00680 and PS417_00685 are separated by 130 nucleotides PS417_00685 and PS417_00690 overlap by 4 nucleotides
PS417_00680: PS417_00680 - TonB-dependent receptor, at 139,370 to 141,823
_00680
PS417_00685: PS417_00685 - hypothetical protein, at 141,954 to 142,658
_00685
PS417_00690: PS417_00690 - hypothetical protein, at 142,655 to 144,823
_00690
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 140.966 kb on + strand, within PS417_00680 at 140.966 kb on + strand, within PS417_00680 at 140.992 kb on + strand, within PS417_00680 at 141.113 kb on + strand, within PS417_00680 at 141.114 kb on - strand, within PS417_00680 at 141.114 kb on - strand, within PS417_00680 at 141.243 kb on - strand, within PS417_00680 at 141.340 kb on + strand, within PS417_00680 at 141.446 kb on + strand, within PS417_00680 at 141.447 kb on - strand, within PS417_00680 at 141.524 kb on + strand, within PS417_00680 at 141.524 kb on + strand, within PS417_00680 at 141.608 kb on + strand at 141.608 kb on + strand at 141.609 kb on - strand at 141.609 kb on - strand at 141.635 kb on + strand at 141.636 kb on - strand at 141.740 kb on + strand at 141.741 kb on - strand at 141.741 kb on - strand at 141.741 kb on - strand at 141.773 kb on + strand at 141.773 kb on + strand at 141.774 kb on - strand at 141.776 kb on + strand at 141.813 kb on - strand at 141.821 kb on + strand at 141.839 kb on - strand at 141.980 kb on - strand at 142.006 kb on - strand at 142.006 kb on - strand at 142.009 kb on + strand at 142.087 kb on + strand, within PS417_00685 at 142.123 kb on + strand, within PS417_00685 at 142.123 kb on + strand, within PS417_00685 at 142.123 kb on + strand, within PS417_00685 at 142.124 kb on - strand, within PS417_00685 at 142.373 kb on - strand, within PS417_00685 at 142.522 kb on + strand at 142.522 kb on + strand, within PS417_00685 at 142.589 kb on - strand at 142.662 kb on + strand at 142.665 kb on + strand at 142.666 kb on - strand at 142.666 kb on - strand at 142.770 kb on + strand at 142.770 kb on + strand at 142.770 kb on + strand at 143.124 kb on + strand, within PS417_00690 at 143.124 kb on + strand, within PS417_00690 at 143.125 kb on - strand, within PS417_00690 at 143.325 kb on + strand, within PS417_00690 at 143.325 kb on + strand, within PS417_00690 at 143.325 kb on + strand, within PS417_00690 at 143.326 kb on - strand, within PS417_00690 at 143.394 kb on + strand, within PS417_00690 at 143.395 kb on - strand, within PS417_00690 at 143.544 kb on + strand, within PS417_00690 at 143.545 kb on - strand, within PS417_00690 at 143.545 kb on - strand, within PS417_00690 at 143.610 kb on + strand at 143.611 kb on - strand, within PS417_00690 at 143.640 kb on + strand, within PS417_00690 at 143.641 kb on - strand, within PS417_00690 at 143.641 kb on - strand, within PS417_00690
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 140,966 + PS417_00680 0.65 -0.2 140,966 + PS417_00680 0.65 +0.5 140,992 + PS417_00680 0.66 +0.4 141,113 + PS417_00680 0.71 -1.8 141,114 - PS417_00680 0.71 +0.6 141,114 - PS417_00680 0.71 -1.1 141,243 - PS417_00680 0.76 -1.6 141,340 + PS417_00680 0.80 -1.0 141,446 + PS417_00680 0.85 +1.0 141,447 - PS417_00680 0.85 -0.2 141,524 + PS417_00680 0.88 -1.4 141,524 + PS417_00680 0.88 -0.2 141,608 + -0.4 141,608 + +0.6 141,609 - -1.1 141,609 - +0.5 141,635 + +4.4 141,636 - -0.1 141,740 + -0.3 141,741 - -0.2 141,741 - +0.2 141,741 - -1.1 141,773 + +0.3 141,773 + +0.7 141,774 - +1.7 141,776 + +1.1 141,813 - +0.5 141,821 + -0.4 141,839 - +0.4 141,980 - +0.4 142,006 - -0.6 142,006 - +0.9 142,009 + -0.3 142,087 + PS417_00685 0.19 +0.3 142,123 + PS417_00685 0.24 +1.1 142,123 + PS417_00685 0.24 +2.2 142,123 + PS417_00685 0.24 -0.8 142,124 - PS417_00685 0.24 +2.7 142,373 - PS417_00685 0.59 +0.4 142,522 + -0.3 142,522 + PS417_00685 0.81 -0.1 142,589 - -0.2 142,662 + +0.7 142,665 + -0.3 142,666 - +0.5 142,666 - +1.4 142,770 + +0.1 142,770 + +0.1 142,770 + +1.2 143,124 + PS417_00690 0.22 +1.1 143,124 + PS417_00690 0.22 -0.6 143,125 - PS417_00690 0.22 +0.1 143,325 + PS417_00690 0.31 -0.7 143,325 + PS417_00690 0.31 -0.2 143,325 + PS417_00690 0.31 +0.6 143,326 - PS417_00690 0.31 +0.7 143,394 + PS417_00690 0.34 -1.1 143,395 - PS417_00690 0.34 -0.6 143,544 + PS417_00690 0.41 +0.1 143,545 - PS417_00690 0.41 -1.5 143,545 - PS417_00690 0.41 -0.3 143,610 + +1.1 143,611 - PS417_00690 0.44 -1.6 143,640 + PS417_00690 0.45 -0.0 143,641 - PS417_00690 0.45 -1.1 143,641 - PS417_00690 0.45 -0.6
Or see this region's nucleotide sequence