Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26315 and PS417_26320 are separated by 68 nucleotides PS417_26320 and PS417_26325 overlap by 4 nucleotides
PS417_26315: PS417_26315 - glycine/betaine ABC transporter substrate-binding protein, at 5,687,222 to 5,688,169
_26315
PS417_26320: PS417_26320 - ABC transporter permease, at 5,688,238 to 5,689,083
_26320
PS417_26325: PS417_26325 - ABC transporter ATP-binding protein, at 5,689,080 to 5,690,258
_26325
Position (kb) 5688
5689
5690 Strain fitness (log2 ratio) -2
-1
0
1 at 5687.387 kb on + strand, within PS417_26315 at 5687.507 kb on + strand, within PS417_26315 at 5687.562 kb on - strand, within PS417_26315 at 5687.654 kb on + strand, within PS417_26315 at 5687.654 kb on + strand, within PS417_26315 at 5687.918 kb on + strand, within PS417_26315 at 5687.918 kb on + strand, within PS417_26315 at 5687.939 kb on + strand, within PS417_26315 at 5688.120 kb on + strand at 5688.120 kb on + strand at 5688.120 kb on + strand at 5688.121 kb on - strand at 5688.121 kb on - strand at 5688.121 kb on - strand at 5688.121 kb on - strand at 5688.167 kb on + strand at 5688.234 kb on + strand at 5688.234 kb on + strand at 5688.235 kb on - strand at 5688.235 kb on - strand at 5688.264 kb on - strand at 5688.271 kb on + strand at 5688.271 kb on + strand at 5688.272 kb on - strand at 5688.272 kb on - strand at 5688.272 kb on - strand at 5688.316 kb on + strand at 5688.316 kb on + strand at 5688.317 kb on - strand at 5688.317 kb on - strand at 5688.439 kb on - strand, within PS417_26320 at 5688.439 kb on - strand, within PS417_26320 at 5688.439 kb on - strand, within PS417_26320 at 5688.604 kb on + strand, within PS417_26320 at 5688.604 kb on + strand, within PS417_26320 at 5688.605 kb on - strand, within PS417_26320 at 5688.715 kb on - strand, within PS417_26320 at 5688.755 kb on - strand, within PS417_26320 at 5689.063 kb on - strand at 5689.063 kb on - strand at 5689.068 kb on - strand at 5689.068 kb on - strand at 5689.824 kb on + strand, within PS417_26325 at 5689.825 kb on - strand, within PS417_26325 at 5689.866 kb on + strand, within PS417_26325 at 5689.866 kb on + strand, within PS417_26325 at 5689.866 kb on + strand, within PS417_26325 at 5689.866 kb on + strand, within PS417_26325 at 5689.866 kb on + strand, within PS417_26325 at 5689.866 kb on + strand, within PS417_26325 at 5689.866 kb on + strand, within PS417_26325 at 5689.866 kb on + strand, within PS417_26325 at 5689.867 kb on - strand, within PS417_26325 at 5689.875 kb on - strand, within PS417_26325 at 5689.889 kb on + strand, within PS417_26325
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 5,687,387 + PS417_26315 0.17 +0.4 5,687,507 + PS417_26315 0.30 -0.4 5,687,562 - PS417_26315 0.36 -1.0 5,687,654 + PS417_26315 0.46 -0.5 5,687,654 + PS417_26315 0.46 -1.5 5,687,918 + PS417_26315 0.73 -0.9 5,687,918 + PS417_26315 0.73 +0.7 5,687,939 + PS417_26315 0.76 -0.3 5,688,120 + -0.8 5,688,120 + +0.5 5,688,120 + +0.2 5,688,121 - +1.2 5,688,121 - -0.3 5,688,121 - +0.0 5,688,121 - -0.4 5,688,167 + +0.9 5,688,234 + +0.0 5,688,234 + +1.0 5,688,235 - -1.5 5,688,235 - -0.5 5,688,264 - -0.0 5,688,271 + +1.4 5,688,271 + -0.4 5,688,272 - -0.4 5,688,272 - +0.8 5,688,272 - -0.7 5,688,316 + +0.2 5,688,316 + -0.1 5,688,317 - -0.2 5,688,317 - -0.1 5,688,439 - PS417_26320 0.24 -2.1 5,688,439 - PS417_26320 0.24 -0.8 5,688,439 - PS417_26320 0.24 +1.3 5,688,604 + PS417_26320 0.43 -0.7 5,688,604 + PS417_26320 0.43 -1.0 5,688,605 - PS417_26320 0.43 -0.2 5,688,715 - PS417_26320 0.56 -0.5 5,688,755 - PS417_26320 0.61 -0.1 5,689,063 - +0.1 5,689,063 - +0.8 5,689,068 - +0.3 5,689,068 - -0.3 5,689,824 + PS417_26325 0.63 +1.2 5,689,825 - PS417_26325 0.63 -0.5 5,689,866 + PS417_26325 0.67 -0.2 5,689,866 + PS417_26325 0.67 -2.1 5,689,866 + PS417_26325 0.67 -0.3 5,689,866 + PS417_26325 0.67 +0.2 5,689,866 + PS417_26325 0.67 -1.3 5,689,866 + PS417_26325 0.67 -0.0 5,689,866 + PS417_26325 0.67 +0.4 5,689,866 + PS417_26325 0.67 -0.6 5,689,867 - PS417_26325 0.67 -1.1 5,689,875 - PS417_26325 0.67 -0.1 5,689,889 + PS417_26325 0.69 -0.6
Or see this region's nucleotide sequence