Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24410 and PS417_24415 are separated by 133 nucleotides PS417_24415 and PS417_24420 are separated by 63 nucleotides PS417_24420 and PS417_24430 are separated by 206 nucleotides
PS417_24410: PS417_24410 - ligand-gated channel, at 5,299,329 to 5,301,986
_24410
PS417_24415: PS417_24415 - siderophore-interacting protein, at 5,302,120 to 5,303,118
_24415
PS417_24420: PS417_24420 - RNA polymerase sigma70, at 5,303,182 to 5,303,703
_24420
PS417_24430: PS417_24430 - 3-dehydroquinate dehydratase, at 5,303,910 to 5,304,359
_24430
Position (kb) 5302
5303
5304 Strain fitness (log2 ratio) -2
-1
0
1 at 5301.291 kb on + strand, within PS417_24410 at 5301.291 kb on + strand, within PS417_24410 at 5301.291 kb on + strand, within PS417_24410 at 5301.291 kb on + strand, within PS417_24410 at 5301.292 kb on - strand, within PS417_24410 at 5301.325 kb on + strand, within PS417_24410 at 5301.325 kb on + strand, within PS417_24410 at 5301.325 kb on + strand, within PS417_24410 at 5301.325 kb on + strand, within PS417_24410 at 5301.325 kb on + strand, within PS417_24410 at 5301.326 kb on - strand, within PS417_24410 at 5301.326 kb on - strand, within PS417_24410 at 5301.426 kb on - strand, within PS417_24410 at 5301.565 kb on + strand, within PS417_24410 at 5301.565 kb on + strand, within PS417_24410 at 5301.566 kb on - strand, within PS417_24410 at 5301.727 kb on + strand at 5301.727 kb on + strand at 5301.728 kb on - strand at 5301.728 kb on - strand at 5301.746 kb on + strand at 5302.124 kb on + strand at 5302.124 kb on + strand at 5302.125 kb on - strand at 5302.125 kb on - strand at 5302.125 kb on - strand at 5302.361 kb on - strand, within PS417_24415 at 5302.403 kb on + strand, within PS417_24415 at 5302.403 kb on + strand, within PS417_24415 at 5302.403 kb on + strand, within PS417_24415 at 5302.670 kb on + strand, within PS417_24415 at 5302.671 kb on - strand, within PS417_24415 at 5302.671 kb on - strand, within PS417_24415 at 5302.760 kb on + strand, within PS417_24415 at 5302.761 kb on - strand, within PS417_24415 at 5302.761 kb on - strand, within PS417_24415 at 5302.774 kb on - strand at 5302.932 kb on - strand, within PS417_24415 at 5303.086 kb on - strand at 5303.141 kb on + strand at 5303.142 kb on - strand at 5303.145 kb on + strand at 5303.145 kb on + strand at 5303.145 kb on + strand at 5303.146 kb on - strand at 5303.231 kb on + strand at 5303.232 kb on - strand at 5303.529 kb on - strand, within PS417_24420 at 5303.743 kb on + strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.980 kb on - strand, within PS417_24430
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 5,301,291 + PS417_24410 0.74 -1.0 5,301,291 + PS417_24410 0.74 +0.0 5,301,291 + PS417_24410 0.74 -1.9 5,301,291 + PS417_24410 0.74 +1.4 5,301,292 - PS417_24410 0.74 -0.1 5,301,325 + PS417_24410 0.75 -0.0 5,301,325 + PS417_24410 0.75 -0.4 5,301,325 + PS417_24410 0.75 -0.5 5,301,325 + PS417_24410 0.75 +1.0 5,301,325 + PS417_24410 0.75 -0.1 5,301,326 - PS417_24410 0.75 -0.4 5,301,326 - PS417_24410 0.75 -1.4 5,301,426 - PS417_24410 0.79 -2.4 5,301,565 + PS417_24410 0.84 +0.7 5,301,565 + PS417_24410 0.84 +0.2 5,301,566 - PS417_24410 0.84 +0.3 5,301,727 + -0.6 5,301,727 + -0.5 5,301,728 - -1.6 5,301,728 - +0.3 5,301,746 + +0.8 5,302,124 + -1.3 5,302,124 + +0.1 5,302,125 - -1.6 5,302,125 - -0.8 5,302,125 - +0.1 5,302,361 - PS417_24415 0.24 -0.9 5,302,403 + PS417_24415 0.28 -0.4 5,302,403 + PS417_24415 0.28 -1.1 5,302,403 + PS417_24415 0.28 -1.9 5,302,670 + PS417_24415 0.55 +0.1 5,302,671 - PS417_24415 0.55 -0.4 5,302,671 - PS417_24415 0.55 -2.2 5,302,760 + PS417_24415 0.64 +0.0 5,302,761 - PS417_24415 0.64 -0.9 5,302,761 - PS417_24415 0.64 -0.2 5,302,774 - +0.1 5,302,932 - PS417_24415 0.81 -1.4 5,303,086 - -0.6 5,303,141 + +0.2 5,303,142 - +1.5 5,303,145 + +1.1 5,303,145 + +0.6 5,303,145 + -0.5 5,303,146 - +0.4 5,303,231 + +0.0 5,303,232 - +1.1 5,303,529 - PS417_24420 0.66 +0.9 5,303,743 + +0.5 5,303,892 - -0.6 5,303,892 - -1.1 5,303,892 - +0.8 5,303,892 - -0.3 5,303,892 - -0.5 5,303,980 - PS417_24430 0.16 +0.1
Or see this region's nucleotide sequence