Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01900 and PS417_01905 are separated by 149 nucleotides PS417_01905 and PS417_01910 are separated by 249 nucleotides PS417_01910 and PS417_01915 are separated by 148 nucleotides
PS417_01900: PS417_01900 - poly(3-hydroxyalkanoate) depolymerase, at 420,224 to 421,069
_01900
PS417_01905: PS417_01905 - poly(R)-hydroxyalkanoic acid synthase, at 421,219 to 422,898
_01905
PS417_01910: PS417_01910 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 423,148 to 423,525
_01910
PS417_01915: PS417_01915 - ATP-dependent protease ATP-binding subunit HslU, at 423,674 to 425,011
_01915
Position (kb) 421
422
423 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 420.225 kb on + strand at 420.259 kb on + strand at 420.260 kb on - strand at 420.499 kb on - strand, within PS417_01900 at 420.622 kb on - strand, within PS417_01900 at 420.673 kb on + strand, within PS417_01900 at 420.793 kb on - strand, within PS417_01900 at 420.802 kb on - strand, within PS417_01900 at 421.046 kb on - strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.094 kb on + strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.095 kb on - strand at 421.235 kb on + strand at 421.235 kb on + strand at 421.235 kb on + strand at 421.235 kb on + strand at 421.235 kb on + strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.236 kb on - strand at 421.272 kb on + strand at 421.275 kb on + strand at 421.276 kb on - strand at 421.279 kb on + strand at 421.279 kb on + strand at 421.280 kb on - strand at 421.280 kb on - strand at 421.282 kb on + strand at 421.481 kb on - strand, within PS417_01905 at 421.481 kb on - strand, within PS417_01905 at 421.481 kb on - strand, within PS417_01905 at 421.568 kb on + strand at 421.568 kb on + strand, within PS417_01905 at 421.751 kb on + strand, within PS417_01905 at 421.755 kb on + strand, within PS417_01905 at 421.755 kb on + strand, within PS417_01905 at 421.756 kb on - strand, within PS417_01905 at 421.756 kb on - strand, within PS417_01905 at 421.767 kb on - strand, within PS417_01905 at 421.974 kb on - strand, within PS417_01905 at 422.090 kb on + strand, within PS417_01905 at 422.090 kb on + strand, within PS417_01905 at 422.209 kb on + strand, within PS417_01905 at 422.210 kb on - strand, within PS417_01905 at 422.210 kb on - strand, within PS417_01905 at 422.214 kb on - strand, within PS417_01905 at 422.283 kb on - strand, within PS417_01905 at 422.609 kb on + strand, within PS417_01905 at 422.610 kb on - strand, within PS417_01905 at 422.622 kb on - strand, within PS417_01905 at 422.630 kb on + strand, within PS417_01905 at 422.892 kb on + strand at 422.893 kb on - strand at 422.901 kb on - strand at 423.599 kb on + strand at 423.676 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 420,225 + -0.2 420,259 + +0.2 420,260 - -0.9 420,499 - PS417_01900 0.33 -0.1 420,622 - PS417_01900 0.47 +0.7 420,673 + PS417_01900 0.53 -0.8 420,793 - PS417_01900 0.67 -0.5 420,802 - PS417_01900 0.68 +0.8 421,046 - -0.2 421,094 + -0.5 421,094 + +0.2 421,094 + +0.7 421,094 + -0.0 421,095 - +0.2 421,095 - +0.1 421,095 - +0.1 421,095 - -1.5 421,095 - -0.3 421,095 - +0.1 421,095 - -1.0 421,235 + -0.3 421,235 + +0.5 421,235 + +0.5 421,235 + -0.4 421,235 + +3.4 421,236 - -0.6 421,236 - +1.8 421,236 - -1.1 421,236 - -0.2 421,236 - -0.5 421,236 - +0.7 421,272 + -0.5 421,275 + -1.4 421,276 - -1.5 421,279 + +0.2 421,279 + +0.4 421,280 - -0.2 421,280 - -1.1 421,282 + -0.1 421,481 - PS417_01905 0.16 -0.9 421,481 - PS417_01905 0.16 +0.1 421,481 - PS417_01905 0.16 +0.6 421,568 + -1.0 421,568 + PS417_01905 0.21 -2.2 421,751 + PS417_01905 0.32 -1.3 421,755 + PS417_01905 0.32 +1.1 421,755 + PS417_01905 0.32 +0.5 421,756 - PS417_01905 0.32 -2.7 421,756 - PS417_01905 0.32 -0.5 421,767 - PS417_01905 0.33 +1.0 421,974 - PS417_01905 0.45 -0.0 422,090 + PS417_01905 0.52 -0.0 422,090 + PS417_01905 0.52 -0.4 422,209 + PS417_01905 0.59 -1.4 422,210 - PS417_01905 0.59 +3.8 422,210 - PS417_01905 0.59 -0.8 422,214 - PS417_01905 0.59 +0.0 422,283 - PS417_01905 0.63 +0.4 422,609 + PS417_01905 0.83 -1.3 422,610 - PS417_01905 0.83 +0.1 422,622 - PS417_01905 0.84 -0.1 422,630 + PS417_01905 0.84 -0.0 422,892 + -0.0 422,893 - +0.4 422,901 - -1.0 423,599 + +1.4 423,676 - -1.0
Or see this region's nucleotide sequence