Strain Fitness in Pseudomonas simiae WCS417 around PS417_17095

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17085 and PS417_17090 are separated by 73 nucleotidesPS417_17090 and PS417_17095 are separated by 25 nucleotidesPS417_17095 and PS417_17100 are separated by 2 nucleotidesPS417_17100 and PS417_17105 are separated by 18 nucleotides PS417_17085: PS417_17085 - fimbrial assembly protein, at 3,731,588 to 3,733,948 _17085 PS417_17090: PS417_17090 - molecular chaperone, at 3,734,022 to 3,734,810 _17090 PS417_17095: PS417_17095 - spore coat protein, at 3,734,836 to 3,735,324 _17095 PS417_17100: PS417_17100 - spore coat protein, at 3,735,327 to 3,735,869 _17100 PS417_17105: PS417_17105 - spore coat protein, at 3,735,888 to 3,736,430 _17105 Position (kb) 3734 3735 3736Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3733.989 kb on - strandat 3734.140 kb on + strandat 3734.232 kb on + strand, within PS417_17090at 3734.232 kb on + strand, within PS417_17090at 3734.232 kb on + strand, within PS417_17090at 3734.242 kb on + strand, within PS417_17090at 3734.775 kb on - strandat 3734.825 kb on + strandat 3734.826 kb on - strandat 3734.870 kb on + strandat 3734.870 kb on + strandat 3734.871 kb on - strandat 3734.871 kb on - strandat 3734.871 kb on - strandat 3734.871 kb on - strandat 3734.871 kb on - strandat 3734.871 kb on - strandat 3734.912 kb on + strand, within PS417_17095at 3734.913 kb on - strand, within PS417_17095at 3734.931 kb on + strand, within PS417_17095at 3735.011 kb on + strand, within PS417_17095at 3735.012 kb on - strand, within PS417_17095at 3735.179 kb on + strand, within PS417_17095at 3735.195 kb on - strand, within PS417_17095at 3735.328 kb on + strandat 3735.362 kb on - strandat 3735.404 kb on - strandat 3735.493 kb on + strand, within PS417_17100at 3735.494 kb on - strand, within PS417_17100at 3735.617 kb on + strand, within PS417_17100at 3735.846 kb on + strandat 3735.847 kb on - strandat 3735.861 kb on + strandat 3735.861 kb on + strandat 3735.861 kb on + strandat 3735.922 kb on + strandat 3735.947 kb on + strand, within PS417_17105at 3735.947 kb on + strand, within PS417_17105at 3736.030 kb on + strand, within PS417_17105at 3736.030 kb on + strand, within PS417_17105

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,733,989 - -0.6
3,734,140 + +1.2
3,734,232 + PS417_17090 0.27 +1.3
3,734,232 + PS417_17090 0.27 -0.7
3,734,232 + PS417_17090 0.27 -0.5
3,734,242 + PS417_17090 0.28 +1.2
3,734,775 - -0.1
3,734,825 + -0.4
3,734,826 - -0.4
3,734,870 + -0.7
3,734,870 + +0.4
3,734,871 - +0.8
3,734,871 - +0.7
3,734,871 - +0.2
3,734,871 - -0.1
3,734,871 - -1.1
3,734,871 - +3.0
3,734,912 + PS417_17095 0.16 -0.4
3,734,913 - PS417_17095 0.16 -2.9
3,734,931 + PS417_17095 0.19 -0.2
3,735,011 + PS417_17095 0.36 -1.2
3,735,012 - PS417_17095 0.36 -1.2
3,735,179 + PS417_17095 0.70 +1.2
3,735,195 - PS417_17095 0.73 -0.9
3,735,328 + +1.2
3,735,362 - +0.0
3,735,404 - +0.9
3,735,493 + PS417_17100 0.31 +0.1
3,735,494 - PS417_17100 0.31 +0.4
3,735,617 + PS417_17100 0.53 -1.4
3,735,846 + -2.2
3,735,847 - +1.6
3,735,861 + +0.2
3,735,861 + -1.8
3,735,861 + -0.9
3,735,922 + -0.2
3,735,947 + PS417_17105 0.11 -0.3
3,735,947 + PS417_17105 0.11 +0.3
3,736,030 + PS417_17105 0.26 -0.6
3,736,030 + PS417_17105 0.26 +0.0

Or see this region's nucleotide sequence