Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17085 and PS417_17090 are separated by 73 nucleotides PS417_17090 and PS417_17095 are separated by 25 nucleotides PS417_17095 and PS417_17100 are separated by 2 nucleotides PS417_17100 and PS417_17105 are separated by 18 nucleotides
PS417_17085: PS417_17085 - fimbrial assembly protein, at 3,731,588 to 3,733,948
_17085
PS417_17090: PS417_17090 - molecular chaperone, at 3,734,022 to 3,734,810
_17090
PS417_17095: PS417_17095 - spore coat protein, at 3,734,836 to 3,735,324
_17095
PS417_17100: PS417_17100 - spore coat protein, at 3,735,327 to 3,735,869
_17100
PS417_17105: PS417_17105 - spore coat protein, at 3,735,888 to 3,736,430
_17105
Position (kb)
3734
3735
3736 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3733.989 kb on - strand at 3734.140 kb on + strand at 3734.232 kb on + strand, within PS417_17090 at 3734.232 kb on + strand, within PS417_17090 at 3734.232 kb on + strand, within PS417_17090 at 3734.242 kb on + strand, within PS417_17090 at 3734.775 kb on - strand at 3734.825 kb on + strand at 3734.826 kb on - strand at 3734.870 kb on + strand at 3734.870 kb on + strand at 3734.871 kb on - strand at 3734.871 kb on - strand at 3734.871 kb on - strand at 3734.871 kb on - strand at 3734.871 kb on - strand at 3734.871 kb on - strand at 3734.912 kb on + strand, within PS417_17095 at 3734.913 kb on - strand, within PS417_17095 at 3734.931 kb on + strand, within PS417_17095 at 3735.011 kb on + strand, within PS417_17095 at 3735.012 kb on - strand, within PS417_17095 at 3735.179 kb on + strand, within PS417_17095 at 3735.195 kb on - strand, within PS417_17095 at 3735.328 kb on + strand at 3735.362 kb on - strand at 3735.404 kb on - strand at 3735.493 kb on + strand, within PS417_17100 at 3735.494 kb on - strand, within PS417_17100 at 3735.617 kb on + strand, within PS417_17100 at 3735.846 kb on + strand at 3735.847 kb on - strand at 3735.861 kb on + strand at 3735.861 kb on + strand at 3735.861 kb on + strand at 3735.922 kb on + strand at 3735.947 kb on + strand, within PS417_17105 at 3735.947 kb on + strand, within PS417_17105 at 3736.030 kb on + strand, within PS417_17105 at 3736.030 kb on + strand, within PS417_17105
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,733,989 - -0.6 3,734,140 + +1.2 3,734,232 + PS417_17090 0.27 +1.3 3,734,232 + PS417_17090 0.27 -0.7 3,734,232 + PS417_17090 0.27 -0.5 3,734,242 + PS417_17090 0.28 +1.2 3,734,775 - -0.1 3,734,825 + -0.4 3,734,826 - -0.4 3,734,870 + -0.7 3,734,870 + +0.4 3,734,871 - +0.8 3,734,871 - +0.7 3,734,871 - +0.2 3,734,871 - -0.1 3,734,871 - -1.1 3,734,871 - +3.0 3,734,912 + PS417_17095 0.16 -0.4 3,734,913 - PS417_17095 0.16 -2.9 3,734,931 + PS417_17095 0.19 -0.2 3,735,011 + PS417_17095 0.36 -1.2 3,735,012 - PS417_17095 0.36 -1.2 3,735,179 + PS417_17095 0.70 +1.2 3,735,195 - PS417_17095 0.73 -0.9 3,735,328 + +1.2 3,735,362 - +0.0 3,735,404 - +0.9 3,735,493 + PS417_17100 0.31 +0.1 3,735,494 - PS417_17100 0.31 +0.4 3,735,617 + PS417_17100 0.53 -1.4 3,735,846 + -2.2 3,735,847 - +1.6 3,735,861 + +0.2 3,735,861 + -1.8 3,735,861 + -0.9 3,735,922 + -0.2 3,735,947 + PS417_17105 0.11 -0.3 3,735,947 + PS417_17105 0.11 +0.3 3,736,030 + PS417_17105 0.26 -0.6 3,736,030 + PS417_17105 0.26 +0.0
Or see this region's nucleotide sequence