Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01695 and PS417_01700 are separated by 30 nucleotides PS417_01700 and PS417_01705 are separated by 116 nucleotides PS417_01705 and PS417_01710 are separated by 108 nucleotides PS417_01710 and PS417_01715 overlap by 4 nucleotides
PS417_01695: PS417_01695 - hypothetical protein, at 376,573 to 376,827
_01695
PS417_01700: PS417_01700 - lipocalin, at 376,858 to 377,427
_01700
PS417_01705: PS417_01705 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) , at 377,544 to 378,908
_01705
PS417_01710: PS417_01710 - histidine utilization repressor, at 379,017 to 379,766
_01710
PS417_01715: PS417_01715 - hypothetical protein, at 379,763 to 380,323
_01715
Position (kb)
377
378
379 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 376.826 kb on - strand at 376.826 kb on - strand at 376.826 kb on - strand at 376.985 kb on - strand, within PS417_01700 at 377.067 kb on + strand, within PS417_01700 at 377.068 kb on - strand, within PS417_01700 at 377.179 kb on - strand, within PS417_01700 at 377.222 kb on - strand, within PS417_01700 at 377.233 kb on + strand, within PS417_01700 at 377.233 kb on + strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.248 kb on + strand, within PS417_01700 at 377.284 kb on + strand, within PS417_01700 at 377.285 kb on - strand, within PS417_01700 at 377.285 kb on - strand, within PS417_01700 at 377.365 kb on + strand, within PS417_01700 at 377.366 kb on - strand, within PS417_01700 at 377.366 kb on - strand, within PS417_01700 at 377.545 kb on + strand at 377.563 kb on - strand at 377.565 kb on + strand at 377.565 kb on + strand at 377.937 kb on + strand, within PS417_01705 at 377.937 kb on + strand, within PS417_01705 at 377.937 kb on + strand, within PS417_01705 at 377.937 kb on + strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 378.129 kb on + strand, within PS417_01705 at 378.129 kb on + strand, within PS417_01705 at 378.129 kb on + strand, within PS417_01705 at 378.361 kb on + strand, within PS417_01705 at 378.362 kb on - strand, within PS417_01705 at 378.433 kb on + strand, within PS417_01705 at 378.547 kb on + strand, within PS417_01705 at 378.548 kb on - strand, within PS417_01705 at 378.595 kb on + strand, within PS417_01705 at 378.653 kb on - strand, within PS417_01705 at 378.852 kb on + strand at 378.853 kb on - strand at 378.853 kb on - strand at 378.934 kb on + strand at 378.934 kb on + strand at 378.940 kb on + strand at 378.941 kb on - strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.944 kb on + strand at 378.944 kb on + strand at 378.944 kb on + strand at 378.944 kb on + strand at 378.945 kb on - strand at 378.945 kb on - strand at 378.945 kb on - strand at 378.945 kb on - strand at 378.948 kb on + strand at 378.948 kb on + strand at 378.948 kb on + strand at 378.948 kb on + strand at 378.949 kb on - strand at 378.949 kb on - strand at 378.949 kb on - strand at 378.950 kb on + strand at 378.951 kb on - strand at 378.951 kb on - strand at 378.986 kb on + strand at 378.987 kb on - strand at 378.987 kb on - strand at 378.987 kb on - strand at 378.987 kb on - strand at 379.080 kb on + strand at 379.081 kb on - strand at 379.081 kb on - strand at 379.346 kb on + strand, within PS417_01710 at 379.464 kb on - strand, within PS417_01710 at 379.516 kb on - strand, within PS417_01710 at 379.548 kb on + strand, within PS417_01710 at 379.549 kb on - strand, within PS417_01710 at 379.549 kb on - strand, within PS417_01710 at 379.796 kb on + strand at 379.797 kb on - strand at 379.800 kb on + strand at 379.801 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 376,826 - -0.9 376,826 - +0.2 376,826 - -0.5 376,985 - PS417_01700 0.22 -1.3 377,067 + PS417_01700 0.37 +0.1 377,068 - PS417_01700 0.37 -0.6 377,179 - PS417_01700 0.56 -0.3 377,222 - PS417_01700 0.64 +0.4 377,233 + PS417_01700 0.66 -0.4 377,233 + PS417_01700 0.66 +1.0 377,234 - PS417_01700 0.66 +0.7 377,234 - PS417_01700 0.66 -0.0 377,234 - PS417_01700 0.66 +1.0 377,234 - PS417_01700 0.66 +0.0 377,234 - PS417_01700 0.66 +0.7 377,234 - PS417_01700 0.66 -0.0 377,234 - PS417_01700 0.66 -0.6 377,248 + PS417_01700 0.68 -0.7 377,284 + PS417_01700 0.75 +0.7 377,285 - PS417_01700 0.75 +0.1 377,285 - PS417_01700 0.75 -0.0 377,365 + PS417_01700 0.89 +0.7 377,366 - PS417_01700 0.89 -0.5 377,366 - PS417_01700 0.89 -0.0 377,545 + +0.0 377,563 - -0.7 377,565 + +1.2 377,565 + -1.0 377,937 + PS417_01705 0.29 +1.2 377,937 + PS417_01705 0.29 -0.6 377,937 + PS417_01705 0.29 +1.1 377,937 + PS417_01705 0.29 +0.5 377,938 - PS417_01705 0.29 +1.5 377,938 - PS417_01705 0.29 +0.1 377,938 - PS417_01705 0.29 +0.6 377,938 - PS417_01705 0.29 +1.1 377,938 - PS417_01705 0.29 -0.1 378,129 + PS417_01705 0.43 +2.1 378,129 + PS417_01705 0.43 -0.3 378,129 + PS417_01705 0.43 +0.7 378,361 + PS417_01705 0.60 -0.8 378,362 - PS417_01705 0.60 +0.3 378,433 + PS417_01705 0.65 +1.0 378,547 + PS417_01705 0.73 +0.5 378,548 - PS417_01705 0.74 -1.9 378,595 + PS417_01705 0.77 +1.1 378,653 - PS417_01705 0.81 +1.5 378,852 + +1.9 378,853 - +1.3 378,853 - +1.7 378,934 + -0.3 378,934 + +0.5 378,940 + +0.2 378,941 - -0.6 378,942 + -0.2 378,942 + +0.4 378,943 - +0.3 378,943 - +0.9 378,944 + +3.5 378,944 + +1.4 378,944 + -0.3 378,944 + -0.3 378,945 - -0.2 378,945 - -0.1 378,945 - +0.0 378,945 - +0.0 378,948 + +0.7 378,948 + -0.0 378,948 + +1.7 378,948 + -0.6 378,949 - -0.3 378,949 - +0.0 378,949 - -1.1 378,950 + -0.0 378,951 - -0.6 378,951 - +0.0 378,986 + -0.2 378,987 - +0.2 378,987 - +0.6 378,987 - +0.9 378,987 - +0.1 379,080 + -0.1 379,081 - +3.0 379,081 - +1.3 379,346 + PS417_01710 0.44 +0.3 379,464 - PS417_01710 0.60 +0.7 379,516 - PS417_01710 0.67 -0.1 379,548 + PS417_01710 0.71 -1.3 379,549 - PS417_01710 0.71 +0.3 379,549 - PS417_01710 0.71 +0.3 379,796 + +0.2 379,797 - +0.2 379,800 + -0.2 379,801 - +0.4
Or see this region's nucleotide sequence