Strain Fitness in Pseudomonas simiae WCS417 around PS417_01705

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01695 and PS417_01700 are separated by 30 nucleotidesPS417_01700 and PS417_01705 are separated by 116 nucleotidesPS417_01705 and PS417_01710 are separated by 108 nucleotidesPS417_01710 and PS417_01715 overlap by 4 nucleotides PS417_01695: PS417_01695 - hypothetical protein, at 376,573 to 376,827 _01695 PS417_01700: PS417_01700 - lipocalin, at 376,858 to 377,427 _01700 PS417_01705: PS417_01705 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data), at 377,544 to 378,908 _01705 PS417_01710: PS417_01710 - histidine utilization repressor, at 379,017 to 379,766 _01710 PS417_01715: PS417_01715 - hypothetical protein, at 379,763 to 380,323 _01715 Position (kb) 377 378 379Strain fitness (log2 ratio) -2 -1 0 1 2 3at 376.826 kb on - strandat 376.826 kb on - strandat 376.826 kb on - strandat 376.985 kb on - strand, within PS417_01700at 377.067 kb on + strand, within PS417_01700at 377.068 kb on - strand, within PS417_01700at 377.179 kb on - strand, within PS417_01700at 377.222 kb on - strand, within PS417_01700at 377.233 kb on + strand, within PS417_01700at 377.233 kb on + strand, within PS417_01700at 377.234 kb on - strand, within PS417_01700at 377.234 kb on - strand, within PS417_01700at 377.234 kb on - strand, within PS417_01700at 377.234 kb on - strand, within PS417_01700at 377.234 kb on - strand, within PS417_01700at 377.234 kb on - strand, within PS417_01700at 377.234 kb on - strand, within PS417_01700at 377.248 kb on + strand, within PS417_01700at 377.284 kb on + strand, within PS417_01700at 377.285 kb on - strand, within PS417_01700at 377.285 kb on - strand, within PS417_01700at 377.365 kb on + strand, within PS417_01700at 377.366 kb on - strand, within PS417_01700at 377.366 kb on - strand, within PS417_01700at 377.545 kb on + strandat 377.563 kb on - strandat 377.565 kb on + strandat 377.565 kb on + strandat 377.937 kb on + strand, within PS417_01705at 377.937 kb on + strand, within PS417_01705at 377.937 kb on + strand, within PS417_01705at 377.937 kb on + strand, within PS417_01705at 377.938 kb on - strand, within PS417_01705at 377.938 kb on - strand, within PS417_01705at 377.938 kb on - strand, within PS417_01705at 377.938 kb on - strand, within PS417_01705at 377.938 kb on - strand, within PS417_01705at 378.129 kb on + strand, within PS417_01705at 378.129 kb on + strand, within PS417_01705at 378.129 kb on + strand, within PS417_01705at 378.361 kb on + strand, within PS417_01705at 378.362 kb on - strand, within PS417_01705at 378.433 kb on + strand, within PS417_01705at 378.547 kb on + strand, within PS417_01705at 378.548 kb on - strand, within PS417_01705at 378.595 kb on + strand, within PS417_01705at 378.653 kb on - strand, within PS417_01705at 378.852 kb on + strandat 378.853 kb on - strandat 378.853 kb on - strandat 378.934 kb on + strandat 378.934 kb on + strandat 378.940 kb on + strandat 378.941 kb on - strandat 378.942 kb on + strandat 378.942 kb on + strandat 378.943 kb on - strandat 378.943 kb on - strandat 378.944 kb on + strandat 378.944 kb on + strandat 378.944 kb on + strandat 378.944 kb on + strandat 378.945 kb on - strandat 378.945 kb on - strandat 378.945 kb on - strandat 378.945 kb on - strandat 378.948 kb on + strandat 378.948 kb on + strandat 378.948 kb on + strandat 378.948 kb on + strandat 378.949 kb on - strandat 378.949 kb on - strandat 378.949 kb on - strandat 378.950 kb on + strandat 378.951 kb on - strandat 378.951 kb on - strandat 378.986 kb on + strandat 378.987 kb on - strandat 378.987 kb on - strandat 378.987 kb on - strandat 378.987 kb on - strandat 379.080 kb on + strandat 379.081 kb on - strandat 379.081 kb on - strandat 379.346 kb on + strand, within PS417_01710at 379.464 kb on - strand, within PS417_01710at 379.516 kb on - strand, within PS417_01710at 379.548 kb on + strand, within PS417_01710at 379.549 kb on - strand, within PS417_01710at 379.549 kb on - strand, within PS417_01710at 379.796 kb on + strandat 379.797 kb on - strandat 379.800 kb on + strandat 379.801 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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376,826 - -0.9
376,826 - +0.2
376,826 - -0.5
376,985 - PS417_01700 0.22 -1.3
377,067 + PS417_01700 0.37 +0.1
377,068 - PS417_01700 0.37 -0.6
377,179 - PS417_01700 0.56 -0.3
377,222 - PS417_01700 0.64 +0.4
377,233 + PS417_01700 0.66 -0.4
377,233 + PS417_01700 0.66 +1.0
377,234 - PS417_01700 0.66 +0.7
377,234 - PS417_01700 0.66 -0.0
377,234 - PS417_01700 0.66 +1.0
377,234 - PS417_01700 0.66 +0.0
377,234 - PS417_01700 0.66 +0.7
377,234 - PS417_01700 0.66 -0.0
377,234 - PS417_01700 0.66 -0.6
377,248 + PS417_01700 0.68 -0.7
377,284 + PS417_01700 0.75 +0.7
377,285 - PS417_01700 0.75 +0.1
377,285 - PS417_01700 0.75 -0.0
377,365 + PS417_01700 0.89 +0.7
377,366 - PS417_01700 0.89 -0.5
377,366 - PS417_01700 0.89 -0.0
377,545 + +0.0
377,563 - -0.7
377,565 + +1.2
377,565 + -1.0
377,937 + PS417_01705 0.29 +1.2
377,937 + PS417_01705 0.29 -0.6
377,937 + PS417_01705 0.29 +1.1
377,937 + PS417_01705 0.29 +0.5
377,938 - PS417_01705 0.29 +1.5
377,938 - PS417_01705 0.29 +0.1
377,938 - PS417_01705 0.29 +0.6
377,938 - PS417_01705 0.29 +1.1
377,938 - PS417_01705 0.29 -0.1
378,129 + PS417_01705 0.43 +2.1
378,129 + PS417_01705 0.43 -0.3
378,129 + PS417_01705 0.43 +0.7
378,361 + PS417_01705 0.60 -0.8
378,362 - PS417_01705 0.60 +0.3
378,433 + PS417_01705 0.65 +1.0
378,547 + PS417_01705 0.73 +0.5
378,548 - PS417_01705 0.74 -1.9
378,595 + PS417_01705 0.77 +1.1
378,653 - PS417_01705 0.81 +1.5
378,852 + +1.9
378,853 - +1.3
378,853 - +1.7
378,934 + -0.3
378,934 + +0.5
378,940 + +0.2
378,941 - -0.6
378,942 + -0.2
378,942 + +0.4
378,943 - +0.3
378,943 - +0.9
378,944 + +3.5
378,944 + +1.4
378,944 + -0.3
378,944 + -0.3
378,945 - -0.2
378,945 - -0.1
378,945 - +0.0
378,945 - +0.0
378,948 + +0.7
378,948 + -0.0
378,948 + +1.7
378,948 + -0.6
378,949 - -0.3
378,949 - +0.0
378,949 - -1.1
378,950 + -0.0
378,951 - -0.6
378,951 - +0.0
378,986 + -0.2
378,987 - +0.2
378,987 - +0.6
378,987 - +0.9
378,987 - +0.1
379,080 + -0.1
379,081 - +3.0
379,081 - +1.3
379,346 + PS417_01710 0.44 +0.3
379,464 - PS417_01710 0.60 +0.7
379,516 - PS417_01710 0.67 -0.1
379,548 + PS417_01710 0.71 -1.3
379,549 - PS417_01710 0.71 +0.3
379,549 - PS417_01710 0.71 +0.3
379,796 + +0.2
379,797 - +0.2
379,800 + -0.2
379,801 - +0.4

Or see this region's nucleotide sequence