Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04375 and PS417_04380 overlap by 1 nucleotides PS417_04380 and PS417_04385 overlap by 1 nucleotides PS417_04385 and PS417_04390 are separated by 11 nucleotides
PS417_04375: PS417_04375 - ABC transporter ATP-binding protein, at 976,360 to 977,169
_04375
PS417_04380: PS417_04380 - ABC transporter permease, at 977,169 to 977,966
_04380
PS417_04385: PS417_04385 - organic solvent ABC transporter substrate-binding protein, at 977,966 to 978,433
_04385
PS417_04390: PS417_04390 - toluene tolerance protein, at 978,445 to 979,095
_04390
Position (kb) 977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 976.244 kb on - strand at 976.245 kb on + strand at 976.245 kb on + strand at 976.246 kb on - strand at 976.246 kb on - strand at 976.287 kb on + strand at 976.287 kb on + strand at 976.287 kb on + strand at 976.288 kb on - strand at 976.357 kb on + strand at 976.434 kb on + strand at 976.617 kb on + strand, within PS417_04375 at 976.618 kb on - strand, within PS417_04375 at 976.755 kb on - strand, within PS417_04375 at 976.862 kb on - strand, within PS417_04375 at 977.000 kb on - strand, within PS417_04375 at 977.006 kb on - strand, within PS417_04375 at 977.422 kb on - strand, within PS417_04380 at 977.422 kb on - strand, within PS417_04380 at 977.605 kb on - strand, within PS417_04380 at 977.902 kb on - strand at 978.079 kb on + strand, within PS417_04385 at 978.085 kb on + strand, within PS417_04385 at 978.098 kb on + strand, within PS417_04385 at 978.134 kb on - strand, within PS417_04385 at 978.234 kb on + strand, within PS417_04385 at 978.239 kb on - strand, within PS417_04385 at 978.239 kb on - strand, within PS417_04385 at 978.265 kb on + strand, within PS417_04385 at 978.395 kb on - strand at 978.409 kb on + strand at 978.418 kb on + strand at 978.757 kb on + strand, within PS417_04390 at 978.778 kb on + strand, within PS417_04390 at 978.779 kb on - strand, within PS417_04390 at 978.886 kb on + strand, within PS417_04390 at 978.887 kb on - strand, within PS417_04390
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 976,244 - -0.3 976,245 + -1.6 976,245 + -2.3 976,246 - +1.6 976,246 - -1.9 976,287 + -2.0 976,287 + +0.3 976,287 + +0.6 976,288 - -1.9 976,357 + -1.8 976,434 + -0.7 976,617 + PS417_04375 0.32 +0.6 976,618 - PS417_04375 0.32 -1.3 976,755 - PS417_04375 0.49 -0.6 976,862 - PS417_04375 0.62 -0.2 977,000 - PS417_04375 0.79 +0.6 977,006 - PS417_04375 0.80 +1.1 977,422 - PS417_04380 0.32 -0.9 977,422 - PS417_04380 0.32 +0.1 977,605 - PS417_04380 0.55 +0.1 977,902 - -0.8 978,079 + PS417_04385 0.24 -0.6 978,085 + PS417_04385 0.25 -1.3 978,098 + PS417_04385 0.28 -1.9 978,134 - PS417_04385 0.36 -0.7 978,234 + PS417_04385 0.57 +3.1 978,239 - PS417_04385 0.58 +0.9 978,239 - PS417_04385 0.58 -1.9 978,265 + PS417_04385 0.64 -1.4 978,395 - +0.9 978,409 + -1.6 978,418 + -0.3 978,757 + PS417_04390 0.48 -1.0 978,778 + PS417_04390 0.51 +1.6 978,779 - PS417_04390 0.51 -2.9 978,886 + PS417_04390 0.68 -0.4 978,887 - PS417_04390 0.68 -1.5
Or see this region's nucleotide sequence