Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02950 and PS417_02955 are separated by 185 nucleotides PS417_02955 and PS417_02960 are separated by 30 nucleotides
PS417_02950: PS417_02950 - tRNA-dihydrouridine synthase B, at 674,263 to 675,276
_02950
PS417_02955: PS417_02955 - hypothetical protein, at 675,462 to 676,676
_02955
PS417_02960: PS417_02960 - ribosomal protein L11 methyltransferase, at 676,707 to 677,585
_02960
Position (kb) 675
676
677 Strain fitness (log2 ratio) -2
-1
0
1 at 675.161 kb on - strand, within PS417_02950 at 675.185 kb on - strand at 675.245 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.277 kb on - strand at 675.277 kb on - strand at 675.307 kb on - strand at 675.491 kb on - strand at 675.503 kb on + strand at 675.533 kb on + strand at 675.534 kb on - strand at 675.691 kb on + strand, within PS417_02955 at 675.691 kb on + strand, within PS417_02955 at 675.691 kb on + strand, within PS417_02955 at 675.692 kb on - strand, within PS417_02955 at 675.692 kb on - strand, within PS417_02955 at 675.877 kb on + strand, within PS417_02955 at 675.878 kb on - strand, within PS417_02955 at 676.708 kb on + strand at 676.911 kb on + strand, within PS417_02960 at 676.912 kb on - strand, within PS417_02960 at 676.948 kb on + strand, within PS417_02960 at 676.949 kb on - strand, within PS417_02960 at 677.534 kb on - strand at 677.534 kb on - strand at 677.534 kb on - strand at 677.534 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 675,161 - PS417_02950 0.89 +1.6 675,185 - -0.3 675,245 - -1.3 675,250 - -0.6 675,250 - -2.6 675,250 - -0.8 675,250 - -0.7 675,250 - +0.5 675,250 - +0.1 675,250 - -0.2 675,277 - -1.4 675,277 - -0.2 675,307 - -0.4 675,491 - +1.6 675,503 + +0.7 675,533 + -0.8 675,534 - -1.2 675,691 + PS417_02955 0.19 -0.9 675,691 + PS417_02955 0.19 -0.7 675,691 + PS417_02955 0.19 -0.9 675,692 - PS417_02955 0.19 -1.1 675,692 - PS417_02955 0.19 -0.5 675,877 + PS417_02955 0.34 -0.8 675,878 - PS417_02955 0.34 -1.7 676,708 + +0.2 676,911 + PS417_02960 0.23 -0.1 676,912 - PS417_02960 0.23 -0.3 676,948 + PS417_02960 0.27 -0.5 676,949 - PS417_02960 0.28 -0.0 677,534 - -0.5 677,534 - -0.0 677,534 - -0.2 677,534 - -0.7
Or see this region's nucleotide sequence