Strain Fitness in Pseudomonas simiae WCS417 around PS417_25645
Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Parafilmed volatile agar plate with no fungus |
|---|---|---|---|---|---|
| remove | |||||
| 5,539,623 | - | -0.9 | |||
| 5,539,623 | - | -1.8 | |||
| 5,539,638 | - | -1.4 | |||
| 5,539,718 | + | +1.7 | |||
| 5,539,786 | + | -0.1 | |||
| 5,539,786 | + | +0.9 | |||
| 5,540,415 | - | PS417_25645 | 0.44 | -1.9 | |
| 5,540,641 | - | PS417_25645 | 0.60 | +0.9 | |
| 5,540,667 | + | PS417_25645 | 0.62 | -0.2 | |
| 5,540,670 | + | PS417_25645 | 0.62 | -1.3 | |
| 5,540,687 | + | PS417_25645 | 0.63 | -2.4 | |
| 5,540,687 | + | PS417_25645 | 0.63 | -1.1 | |
| 5,540,732 | + | PS417_25645 | 0.66 | +0.1 | |
| 5,540,732 | + | PS417_25645 | 0.66 | -1.8 | |
| 5,540,733 | - | PS417_25645 | 0.66 | +0.5 | |
| 5,540,916 | + | PS417_25645 | 0.79 | +1.1 | |
| 5,541,042 | + | PS417_25645 | 0.88 | -2.7 | |
| 5,541,222 | + | -0.0 | |||
| 5,541,222 | + | -0.3 | |||
| 5,541,312 | + | +0.5 | |||
| 5,541,313 | - | -0.7 | |||
| 5,541,313 | - | +1.0 | |||
| 5,541,329 | + | PS417_25650 | 0.11 | +0.2 | |
| 5,541,330 | - | PS417_25650 | 0.11 | -1.4 | |
| 5,541,334 | + | PS417_25650 | 0.11 | -1.4 | |
| 5,541,576 | - | PS417_25650 | 0.33 | -0.7 | |
| 5,541,576 | - | PS417_25650 | 0.33 | +2.1 | |
| 5,541,803 | - | PS417_25650 | 0.54 | -0.2 |
Or see this region's nucleotide sequence