Strain Fitness in Pseudomonas simiae WCS417 around PS417_24110

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24105 and PS417_24110 are separated by 69 nucleotidesPS417_24110 and PS417_24115 are separated by 151 nucleotides PS417_24105: PS417_24105 - D-lactate transporter (lctP family) (from data), at 5,218,053 to 5,219,747 _24105 PS417_24110: PS417_24110 - 4Fe-4S ferredoxin, at 5,219,817 to 5,222,627 _24110 PS417_24115: PS417_24115 - hypothetical protein, at 5,222,779 to 5,223,057 _24115 Position (kb) 5219 5220 5221 5222 5223Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5219.020 kb on + strand, within PS417_24105at 5219.030 kb on + strand, within PS417_24105at 5219.031 kb on - strand, within PS417_24105at 5219.082 kb on + strand, within PS417_24105at 5219.082 kb on + strand, within PS417_24105at 5219.082 kb on + strand, within PS417_24105at 5219.083 kb on - strand, within PS417_24105at 5219.083 kb on - strand, within PS417_24105at 5219.083 kb on - strand, within PS417_24105at 5219.083 kb on - strand, within PS417_24105at 5219.274 kb on - strand, within PS417_24105at 5219.274 kb on - strand, within PS417_24105at 5219.274 kb on - strand, within PS417_24105at 5219.282 kb on - strand, within PS417_24105at 5219.296 kb on - strand, within PS417_24105at 5219.296 kb on - strand, within PS417_24105at 5219.358 kb on + strand, within PS417_24105at 5219.359 kb on - strand, within PS417_24105at 5219.657 kb on + strandat 5219.658 kb on - strandat 5219.746 kb on - strandat 5219.746 kb on - strandat 5219.758 kb on + strandat 5219.758 kb on + strandat 5219.759 kb on - strandat 5219.759 kb on - strandat 5219.759 kb on - strandat 5219.759 kb on - strandat 5219.759 kb on - strandat 5219.761 kb on + strandat 5219.766 kb on + strandat 5219.801 kb on + strandat 5219.801 kb on + strandat 5219.802 kb on - strandat 5220.011 kb on - strandat 5220.011 kb on - strandat 5220.468 kb on + strand, within PS417_24110at 5220.594 kb on + strand, within PS417_24110at 5220.594 kb on + strand, within PS417_24110at 5220.607 kb on + strand, within PS417_24110at 5220.607 kb on + strand, within PS417_24110at 5220.608 kb on - strand, within PS417_24110at 5220.608 kb on - strand, within PS417_24110at 5221.170 kb on + strand, within PS417_24110at 5221.430 kb on + strand, within PS417_24110at 5221.431 kb on - strand, within PS417_24110at 5221.573 kb on - strand, within PS417_24110at 5221.573 kb on - strand, within PS417_24110at 5221.667 kb on - strand, within PS417_24110at 5221.929 kb on + strand, within PS417_24110at 5221.929 kb on + strand, within PS417_24110at 5221.929 kb on + strand, within PS417_24110at 5222.098 kb on - strand, within PS417_24110at 5222.118 kb on - strand, within PS417_24110at 5222.236 kb on + strand, within PS417_24110at 5222.236 kb on + strand, within PS417_24110at 5222.236 kb on + strand, within PS417_24110at 5222.245 kb on - strand, within PS417_24110at 5222.519 kb on + strandat 5222.519 kb on + strandat 5222.590 kb on - strandat 5222.590 kb on - strandat 5222.689 kb on + strandat 5222.689 kb on + strandat 5222.690 kb on - strandat 5222.774 kb on - strandat 5222.774 kb on - strandat 5222.778 kb on + strandat 5222.779 kb on - strandat 5222.779 kb on - strandat 5222.779 kb on - strandat 5222.896 kb on - strand, within PS417_24115at 5222.939 kb on + strand, within PS417_24115at 5223.570 kb on - strandat 5223.570 kb on - strandat 5223.570 kb on - strandat 5223.602 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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5,219,020 + PS417_24105 0.57 +0.7
5,219,030 + PS417_24105 0.58 -1.6
5,219,031 - PS417_24105 0.58 +1.0
5,219,082 + PS417_24105 0.61 +0.4
5,219,082 + PS417_24105 0.61 -0.1
5,219,082 + PS417_24105 0.61 +1.4
5,219,083 - PS417_24105 0.61 -1.8
5,219,083 - PS417_24105 0.61 +0.7
5,219,083 - PS417_24105 0.61 -0.1
5,219,083 - PS417_24105 0.61 -0.5
5,219,274 - PS417_24105 0.72 -1.2
5,219,274 - PS417_24105 0.72 -0.2
5,219,274 - PS417_24105 0.72 +0.3
5,219,282 - PS417_24105 0.73 +0.2
5,219,296 - PS417_24105 0.73 -0.6
5,219,296 - PS417_24105 0.73 -0.4
5,219,358 + PS417_24105 0.77 -0.6
5,219,359 - PS417_24105 0.77 -0.1
5,219,657 + +0.8
5,219,658 - +0.7
5,219,746 - -0.1
5,219,746 - +0.8
5,219,758 + -0.1
5,219,758 + -0.7
5,219,759 - -0.2
5,219,759 - -0.1
5,219,759 - -0.7
5,219,759 - +2.8
5,219,759 - +1.5
5,219,761 + -0.0
5,219,766 + -0.7
5,219,801 + +0.1
5,219,801 + -0.6
5,219,802 - +0.1
5,220,011 - +1.5
5,220,011 - -0.4
5,220,468 + PS417_24110 0.23 -0.5
5,220,594 + PS417_24110 0.28 -0.5
5,220,594 + PS417_24110 0.28 -0.5
5,220,607 + PS417_24110 0.28 -0.9
5,220,607 + PS417_24110 0.28 -0.3
5,220,608 - PS417_24110 0.28 +0.3
5,220,608 - PS417_24110 0.28 -0.1
5,221,170 + PS417_24110 0.48 +0.1
5,221,430 + PS417_24110 0.57 -0.5
5,221,431 - PS417_24110 0.57 +0.4
5,221,573 - PS417_24110 0.62 -0.8
5,221,573 - PS417_24110 0.62 +0.1
5,221,667 - PS417_24110 0.66 +0.1
5,221,929 + PS417_24110 0.75 -2.5
5,221,929 + PS417_24110 0.75 +0.1
5,221,929 + PS417_24110 0.75 +1.6
5,222,098 - PS417_24110 0.81 +0.9
5,222,118 - PS417_24110 0.82 +0.1
5,222,236 + PS417_24110 0.86 -0.4
5,222,236 + PS417_24110 0.86 +1.9
5,222,236 + PS417_24110 0.86 -1.1
5,222,245 - PS417_24110 0.86 -0.8
5,222,519 + +0.5
5,222,519 + -0.8
5,222,590 - -0.5
5,222,590 - +0.7
5,222,689 + -1.1
5,222,689 + +0.4
5,222,690 - -0.2
5,222,774 - -2.3
5,222,774 - +1.5
5,222,778 + -1.3
5,222,779 - +1.3
5,222,779 - +0.6
5,222,779 - +0.3
5,222,896 - PS417_24115 0.42 +0.1
5,222,939 + PS417_24115 0.57 +0.4
5,223,570 - +1.9
5,223,570 - -2.1
5,223,570 - -1.2
5,223,602 + -1.0

Or see this region's nucleotide sequence