Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20040 and PS417_20045 overlap by 4 nucleotides PS417_20045 and PS417_20050 overlap by 8 nucleotides PS417_20050 and PS417_20055 overlap by 4 nucleotides
PS417_20040: PS417_20040 - cobyric acid synthase, at 4,348,987 to 4,350,438
_20040
PS417_20045: PS417_20045 - threonine-phosphate decarboxylase, at 4,350,435 to 4,351,424
_20045
PS417_20050: PS417_20050 - cobalamin biosynthesis protein CobD, at 4,351,417 to 4,352,325
_20050
PS417_20055: PS417_20055 - cob(II)yrinic acid a,c-diamide reductase, at 4,352,322 to 4,352,972
_20055
Position (kb) 4350
4351
4352 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4349.526 kb on - strand, within PS417_20040 at 4349.526 kb on - strand, within PS417_20040 at 4349.542 kb on + strand, within PS417_20040 at 4349.766 kb on - strand, within PS417_20040 at 4349.863 kb on - strand, within PS417_20040 at 4350.066 kb on - strand, within PS417_20040 at 4350.440 kb on + strand at 4350.441 kb on - strand at 4350.441 kb on - strand at 4350.449 kb on + strand at 4350.726 kb on + strand, within PS417_20045 at 4350.726 kb on + strand, within PS417_20045 at 4350.726 kb on + strand, within PS417_20045 at 4350.726 kb on + strand, within PS417_20045 at 4350.726 kb on + strand, within PS417_20045 at 4350.727 kb on - strand, within PS417_20045 at 4350.727 kb on - strand, within PS417_20045 at 4350.727 kb on - strand, within PS417_20045 at 4350.940 kb on - strand, within PS417_20045 at 4351.044 kb on + strand, within PS417_20045 at 4351.139 kb on - strand, within PS417_20045 at 4351.241 kb on - strand, within PS417_20045 at 4351.243 kb on + strand, within PS417_20045 at 4351.424 kb on + strand at 4351.425 kb on - strand at 4351.562 kb on + strand, within PS417_20050 at 4351.562 kb on + strand, within PS417_20050 at 4351.562 kb on + strand, within PS417_20050 at 4351.562 kb on + strand, within PS417_20050 at 4351.562 kb on + strand, within PS417_20050 at 4351.563 kb on - strand, within PS417_20050 at 4351.563 kb on - strand, within PS417_20050 at 4351.563 kb on - strand, within PS417_20050 at 4351.700 kb on + strand, within PS417_20050 at 4351.701 kb on - strand, within PS417_20050 at 4351.701 kb on - strand, within PS417_20050 at 4351.730 kb on + strand, within PS417_20050 at 4351.822 kb on + strand, within PS417_20050 at 4351.966 kb on + strand, within PS417_20050 at 4351.966 kb on + strand, within PS417_20050 at 4351.966 kb on + strand, within PS417_20050 at 4351.974 kb on - strand, within PS417_20050 at 4352.073 kb on - strand, within PS417_20050 at 4352.106 kb on - strand, within PS417_20050 at 4352.106 kb on - strand, within PS417_20050 at 4352.350 kb on + strand at 4352.413 kb on + strand, within PS417_20055
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,349,526 - PS417_20040 0.37 -1.5 4,349,526 - PS417_20040 0.37 -1.2 4,349,542 + PS417_20040 0.38 -0.4 4,349,766 - PS417_20040 0.54 +0.8 4,349,863 - PS417_20040 0.60 +1.5 4,350,066 - PS417_20040 0.74 -0.9 4,350,440 + -1.7 4,350,441 - +0.3 4,350,441 - +0.2 4,350,449 + +0.4 4,350,726 + PS417_20045 0.29 -0.7 4,350,726 + PS417_20045 0.29 -0.6 4,350,726 + PS417_20045 0.29 -0.3 4,350,726 + PS417_20045 0.29 -0.6 4,350,726 + PS417_20045 0.29 -0.9 4,350,727 - PS417_20045 0.29 +0.3 4,350,727 - PS417_20045 0.29 +0.9 4,350,727 - PS417_20045 0.29 -1.8 4,350,940 - PS417_20045 0.51 -1.9 4,351,044 + PS417_20045 0.62 -0.6 4,351,139 - PS417_20045 0.71 -1.6 4,351,241 - PS417_20045 0.81 +0.4 4,351,243 + PS417_20045 0.82 -1.8 4,351,424 + -0.8 4,351,425 - -1.0 4,351,562 + PS417_20050 0.16 -0.9 4,351,562 + PS417_20050 0.16 +0.9 4,351,562 + PS417_20050 0.16 +0.8 4,351,562 + PS417_20050 0.16 -0.9 4,351,562 + PS417_20050 0.16 -2.9 4,351,563 - PS417_20050 0.16 -0.0 4,351,563 - PS417_20050 0.16 +0.1 4,351,563 - PS417_20050 0.16 -1.1 4,351,700 + PS417_20050 0.31 -0.9 4,351,701 - PS417_20050 0.31 +0.0 4,351,701 - PS417_20050 0.31 -0.2 4,351,730 + PS417_20050 0.34 -1.8 4,351,822 + PS417_20050 0.45 +0.0 4,351,966 + PS417_20050 0.60 +0.8 4,351,966 + PS417_20050 0.60 +0.0 4,351,966 + PS417_20050 0.60 -1.0 4,351,974 - PS417_20050 0.61 -0.7 4,352,073 - PS417_20050 0.72 -0.9 4,352,106 - PS417_20050 0.76 -0.1 4,352,106 - PS417_20050 0.76 +0.6 4,352,350 + +0.4 4,352,413 + PS417_20055 0.14 -0.6
Or see this region's nucleotide sequence