Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19875 and PS417_19880 are separated by 9 nucleotides PS417_19880 and PS417_19885 are separated by 53 nucleotides PS417_19885 and PS417_19890 are separated by 71 nucleotides
PS417_19875: PS417_19875 - flagellar P-ring protein FlgI, at 4,316,675 to 4,317,781
_19875
PS417_19880: PS417_19880 - flagellar basal body L-ring protein, at 4,317,791 to 4,318,486
_19880
PS417_19885: PS417_19885 - flagellar basal body rod protein FlgG, at 4,318,540 to 4,319,325
_19885
PS417_19890: PS417_19890 - flagellar basal body rod protein FlgF, at 4,319,397 to 4,320,137
_19890
Position (kb) 4317
4318
4319 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4317.278 kb on - strand, within PS417_19875 at 4317.778 kb on + strand at 4317.793 kb on - strand at 4317.793 kb on - strand at 4318.004 kb on + strand, within PS417_19880 at 4318.028 kb on + strand, within PS417_19880 at 4318.029 kb on - strand, within PS417_19880 at 4318.116 kb on + strand, within PS417_19880 at 4318.199 kb on - strand, within PS417_19880 at 4318.339 kb on - strand, within PS417_19880 at 4318.375 kb on + strand, within PS417_19880 at 4318.376 kb on - strand, within PS417_19880 at 4318.376 kb on - strand, within PS417_19880 at 4318.395 kb on + strand, within PS417_19880 at 4318.395 kb on + strand, within PS417_19880 at 4318.396 kb on - strand, within PS417_19880 at 4318.477 kb on - strand at 4318.531 kb on + strand at 4318.532 kb on - strand at 4318.541 kb on + strand at 4318.985 kb on + strand, within PS417_19885 at 4318.986 kb on - strand, within PS417_19885 at 4319.372 kb on + strand at 4319.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,317,278 - PS417_19875 0.54 -1.5 4,317,778 + -2.3 4,317,793 - -0.1 4,317,793 - +0.4 4,318,004 + PS417_19880 0.31 -2.0 4,318,028 + PS417_19880 0.34 -1.1 4,318,029 - PS417_19880 0.34 -2.5 4,318,116 + PS417_19880 0.47 -3.0 4,318,199 - PS417_19880 0.59 -1.2 4,318,339 - PS417_19880 0.79 -0.8 4,318,375 + PS417_19880 0.84 -1.4 4,318,376 - PS417_19880 0.84 +0.0 4,318,376 - PS417_19880 0.84 -2.1 4,318,395 + PS417_19880 0.87 -0.9 4,318,395 + PS417_19880 0.87 -1.5 4,318,396 - PS417_19880 0.87 -0.5 4,318,477 - -0.9 4,318,531 + -0.8 4,318,532 - -0.3 4,318,541 + -1.6 4,318,985 + PS417_19885 0.57 -0.6 4,318,986 - PS417_19885 0.57 -1.3 4,319,372 + -1.3 4,319,373 - -0.7
Or see this region's nucleotide sequence