Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01865 and PS417_01870 overlap by 1 nucleotides PS417_01870 and PS417_01875 are separated by 144 nucleotides PS417_01875 and PS417_01880 are separated by 105 nucleotides PS417_01880 and PS417_01885 are separated by 12 nucleotides
PS417_01865: PS417_01865 - sterol-binding protein, at 414,389 to 415,012
_01865
PS417_01870: PS417_01870 - ubiquinone biosynthesis methyltransferase UbiE, at 415,012 to 415,782
_01870
PS417_01875: PS417_01875 - polyhydroxyalkanoic acid system protein, at 415,927 to 416,202
_01875
PS417_01880: PS417_01880 - poly(3-hydroxyalkanoate) granule-associated protein PhaI, at 416,308 to 416,730
_01880
PS417_01885: PS417_01885 - poly(3-hydroxyalkanoate) granule-associated protein PhaF, at 416,743 to 417,726
_01885
Position (kb) 415
416
417 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.783 kb on - strand at 415.783 kb on - strand at 415.817 kb on - strand at 415.831 kb on - strand at 415.855 kb on + strand at 415.855 kb on + strand at 415.855 kb on + strand at 415.856 kb on - strand at 415.856 kb on - strand at 415.936 kb on - strand at 415.936 kb on - strand at 416.049 kb on + strand, within PS417_01875 at 416.087 kb on + strand, within PS417_01875 at 416.289 kb on - strand at 416.367 kb on + strand, within PS417_01880 at 416.368 kb on - strand, within PS417_01880 at 416.411 kb on - strand, within PS417_01880 at 416.547 kb on + strand, within PS417_01880 at 416.590 kb on - strand, within PS417_01880 at 416.705 kb on + strand at 416.705 kb on + strand at 416.706 kb on - strand at 416.706 kb on - strand at 416.706 kb on - strand at 416.721 kb on + strand at 416.728 kb on + strand at 416.728 kb on + strand at 416.760 kb on + strand at 416.869 kb on + strand, within PS417_01885 at 416.870 kb on - strand, within PS417_01885 at 416.870 kb on - strand, within PS417_01885 at 417.132 kb on + strand, within PS417_01885
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 415,783 - -1.6 415,783 - -1.6 415,817 - -1.1 415,831 - +1.0 415,855 + -0.8 415,855 + -1.3 415,855 + -0.7 415,856 - -0.3 415,856 - -0.8 415,936 - -0.2 415,936 - +2.3 416,049 + PS417_01875 0.44 -1.0 416,087 + PS417_01875 0.58 -0.8 416,289 - -0.3 416,367 + PS417_01880 0.14 +0.1 416,368 - PS417_01880 0.14 -0.8 416,411 - PS417_01880 0.24 +0.3 416,547 + PS417_01880 0.57 -0.7 416,590 - PS417_01880 0.67 -0.1 416,705 + -0.4 416,705 + -0.5 416,706 - +0.2 416,706 - +0.1 416,706 - -0.4 416,721 + -0.5 416,728 + -0.2 416,728 + -2.0 416,760 + +0.8 416,869 + PS417_01885 0.13 -0.1 416,870 - PS417_01885 0.13 -0.3 416,870 - PS417_01885 0.13 -0.3 417,132 + PS417_01885 0.40 +0.5
Or see this region's nucleotide sequence