Strain Fitness in Pseudomonas simiae WCS417 around PS417_01045

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_01040 and PS417_01045 overlap by 4 nucleotidesPS417_01045 and PS417_01050 overlap by 4 nucleotides PS417_01040: PS417_01040 - RND transporter, at 226,180 to 227,262 _01040 PS417_01045: PS417_01045 - RND transporter, at 227,259 to 228,329 _01045 PS417_01050: PS417_01050 - ACR family transporter, at 228,326 to 231,391 _01050 Position (kb) 227 228 229Strain fitness (log2 ratio) -1 0 1 2 3at 226.339 kb on - strand, within PS417_01040at 226.542 kb on - strand, within PS417_01040at 226.570 kb on + strand, within PS417_01040at 226.570 kb on + strand, within PS417_01040at 226.570 kb on + strand, within PS417_01040at 226.571 kb on - strand, within PS417_01040at 226.746 kb on - strand, within PS417_01040at 226.811 kb on - strand, within PS417_01040at 226.811 kb on - strand, within PS417_01040at 226.811 kb on - strand, within PS417_01040at 226.929 kb on + strand, within PS417_01040at 227.583 kb on + strand, within PS417_01045at 227.583 kb on + strand, within PS417_01045at 227.583 kb on + strand, within PS417_01045at 227.584 kb on - strand, within PS417_01045at 227.584 kb on - strandat 228.384 kb on - strandat 228.423 kb on - strandat 228.573 kb on - strandat 228.573 kb on - strandat 228.751 kb on - strand, within PS417_01050at 228.751 kb on - strand, within PS417_01050at 228.764 kb on + strand, within PS417_01050at 228.893 kb on + strand, within PS417_01050at 229.094 kb on + strand, within PS417_01050at 229.130 kb on + strand, within PS417_01050at 229.130 kb on + strand, within PS417_01050at 229.131 kb on - strand, within PS417_01050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
226,339 - PS417_01040 0.15 -0.0
226,542 - PS417_01040 0.33 +0.3
226,570 + PS417_01040 0.36 +0.1
226,570 + PS417_01040 0.36 +0.7
226,570 + PS417_01040 0.36 +1.6
226,571 - PS417_01040 0.36 -0.5
226,746 - PS417_01040 0.52 -0.5
226,811 - PS417_01040 0.58 -0.1
226,811 - PS417_01040 0.58 +0.1
226,811 - PS417_01040 0.58 -0.9
226,929 + PS417_01040 0.69 +0.6
227,583 + PS417_01045 0.30 -0.1
227,583 + PS417_01045 0.30 -1.3
227,583 + PS417_01045 0.30 -1.0
227,584 - PS417_01045 0.30 -1.4
227,584 - +3.7
228,384 - +0.8
228,423 - -1.2
228,573 - -0.3
228,573 - +0.3
228,751 - PS417_01050 0.14 -1.0
228,751 - PS417_01050 0.14 +0.4
228,764 + PS417_01050 0.14 +0.4
228,893 + PS417_01050 0.18 -1.7
229,094 + PS417_01050 0.25 -0.3
229,130 + PS417_01050 0.26 +0.1
229,130 + PS417_01050 0.26 -1.1
229,131 - PS417_01050 0.26 +0.1

Or see this region's nucleotide sequence