Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01710 and PS417_01715 overlap by 4 nucleotides PS417_01715 and PS417_01720 are separated by 405 nucleotides PS417_01720 and PS417_01725 are separated by 141 nucleotides
PS417_01710: PS417_01710 - histidine utilization repressor, at 379,017 to 379,766
_01710
PS417_01715: PS417_01715 - hypothetical protein, at 379,763 to 380,323
_01715
PS417_01720: PS417_01720 - Urocanate hydratase (EC 4.2.1.49) <small>(from data)</small>, at 380,729 to 382,399
_01720
PS417_01725: PS417_01725 - sulfonate ABC transporter substrate-binding protein, at 382,541 to 383,998
_01725
Position (kb) 380
381
382
383 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 379.796 kb on + strand at 379.797 kb on - strand at 379.800 kb on + strand at 379.801 kb on - strand at 379.937 kb on + strand, within PS417_01715 at 380.255 kb on - strand, within PS417_01715 at 380.372 kb on - strand at 380.372 kb on - strand at 380.550 kb on + strand at 380.567 kb on - strand at 380.648 kb on + strand at 380.659 kb on - strand at 380.659 kb on - strand at 380.740 kb on + strand at 380.741 kb on - strand at 380.883 kb on - strand at 381.113 kb on + strand, within PS417_01720 at 381.113 kb on + strand, within PS417_01720 at 381.113 kb on + strand, within PS417_01720 at 381.114 kb on - strand, within PS417_01720 at 381.114 kb on - strand, within PS417_01720 at 381.114 kb on - strand, within PS417_01720 at 381.114 kb on - strand, within PS417_01720 at 381.114 kb on - strand, within PS417_01720 at 381.143 kb on + strand, within PS417_01720 at 381.144 kb on - strand, within PS417_01720 at 381.176 kb on + strand, within PS417_01720 at 381.177 kb on - strand at 381.209 kb on + strand, within PS417_01720 at 381.209 kb on + strand, within PS417_01720 at 381.210 kb on - strand, within PS417_01720 at 381.413 kb on + strand, within PS417_01720 at 381.773 kb on + strand, within PS417_01720 at 381.849 kb on - strand, within PS417_01720 at 382.398 kb on - strand at 382.398 kb on - strand at 382.402 kb on - strand at 382.442 kb on + strand at 382.601 kb on + strand at 382.602 kb on - strand at 382.632 kb on + strand at 382.633 kb on - strand at 382.633 kb on - strand at 382.636 kb on + strand at 382.850 kb on + strand, within PS417_01725 at 382.889 kb on + strand, within PS417_01725 at 382.889 kb on + strand, within PS417_01725 at 382.890 kb on - strand, within PS417_01725 at 382.917 kb on + strand, within PS417_01725 at 383.223 kb on - strand, within PS417_01725 at 383.363 kb on + strand, within PS417_01725 at 383.364 kb on - strand, within PS417_01725 at 383.364 kb on - strand, within PS417_01725
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 379,796 + +0.4 379,797 - -0.0 379,800 + -0.2 379,801 - -0.4 379,937 + PS417_01715 0.31 +0.7 380,255 - PS417_01715 0.88 +0.7 380,372 - +0.3 380,372 - +0.1 380,550 + -0.2 380,567 - +0.5 380,648 + +0.8 380,659 - +0.4 380,659 - -0.0 380,740 + -0.8 380,741 - +0.7 380,883 - -0.4 381,113 + PS417_01720 0.23 -0.0 381,113 + PS417_01720 0.23 -0.5 381,113 + PS417_01720 0.23 -1.3 381,114 - PS417_01720 0.23 -0.4 381,114 - PS417_01720 0.23 -0.8 381,114 - PS417_01720 0.23 +0.8 381,114 - PS417_01720 0.23 +0.2 381,114 - PS417_01720 0.23 +0.1 381,143 + PS417_01720 0.25 -0.4 381,144 - PS417_01720 0.25 -0.6 381,176 + PS417_01720 0.27 +1.3 381,177 - +0.1 381,209 + PS417_01720 0.29 +0.4 381,209 + PS417_01720 0.29 +4.8 381,210 - PS417_01720 0.29 -0.8 381,413 + PS417_01720 0.41 +0.9 381,773 + PS417_01720 0.62 +0.5 381,849 - PS417_01720 0.67 +0.4 382,398 - -0.1 382,398 - -0.8 382,402 - -0.3 382,442 + -1.3 382,601 + +0.1 382,602 - -0.3 382,632 + -0.2 382,633 - -0.4 382,633 - -0.8 382,636 + -0.4 382,850 + PS417_01725 0.21 +0.4 382,889 + PS417_01725 0.24 -0.4 382,889 + PS417_01725 0.24 -0.3 382,890 - PS417_01725 0.24 +2.1 382,917 + PS417_01725 0.26 -0.1 383,223 - PS417_01725 0.47 +1.0 383,363 + PS417_01725 0.56 +0.1 383,364 - PS417_01725 0.56 +0.4 383,364 - PS417_01725 0.56 -0.5
Or see this region's nucleotide sequence